RNA id: XM_034297720.1


Basic Information

Item Value
RNA id XM_034297720.1
length 4927
RNA type mRNA
GC content 0.55
exon number 36
gene id LOC113533549
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14834902 ~ 15035981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTCGCGCGCGCGCTCCTCATCCACTACTCCGACACATAACGGTCGGAGCGCGAGAGCTCCAACACTACCCTCtaccggagagagagagagcgagaaagagagagagagagagagagaagagagagagagagactcttcACGCTCCTCCTGGAAGAGAAGAGACCTGGGAGAAGTCAGAGAGCGAGTCCGGGAGAAGGAGACTGAGACAGGGGGGAAAACGACTGAGGCGACTCCAGAAGAAAACGGACGCTTGGCTACAGTTTGGCGTTGTTACCTCACGGCCGCGGGGGTCGACACACGCCGGAAACTGAGGACATGGATAAAGTTTTAACTTGGCTCGTCACCGCGGTAGGGCTCCTGGTGTCGGCACGCGGACAGGTGTACAAAGGCGATTGCAGCTTCGAGAAGCCGTTTGGGGCGTGCGGCTACAGCCAGGGACGAGATGACGACCTTGAGTGGGAACAGGCCAACACCAAAGAAAAGCCTTCCGCAAACCAGTGGATGCCTCCTGGTTCAGCCTTCATGATGGTGAACACGTCAGGCCGTTTCGCCGGACAGAGAGCCCAGCTGCTGAGCCCTCAGCTCAAAGAGAACGACACACATTGCGTCACCTTTCAGTACTTGGTGTCTGGCAGGGAGGGGGGCAGCCCCGGGTACCTCAACATCTACATCAAAGAGAACAACAGCCCCACTGGTCTTCCCGTGTGGAACACTTCAGGCCCCGTCAGCAGGAGCTGGACCCAAGTGGAACTCGCTATCAGCACCTACTGGCCCAACTTCTACCAGATCATCTTTGAAGCTGTGACCTCAGGCCAGCGTGGTTTGCTGGCCATCAAGGATGTCGTCGTCCAGGGACATCAGTGCATGACAACGCCACACTTCCTCCATATTAAAGGAGTGGAGGTGAACGCAGGGCAGACAGCTACCTTCCACTGCACTGTCAACGGAGAGTGGAGAGACAACTTTCACCTGTGGCTGCAgGGTATTGGTGGAAGAGAGGCGCCTATGAAGGCCACTAAACCATGGAATAACCAGCGGTTCATTGGGATGTTCGACGTGGTGAACACCACAAAACAGGACTCAGGCCGCTACCGCTGCATAGTTCATTCCACCAGGGGAGTAGGTGTGTCCAACTACGGAGAACTGACCATCAAACAACCCCCAGTCCCCATCGCTCCTCCCCAGCTGACAGCAGTGGGCGCTACCTACCTGTGGATCCAGCTCAACGCCAACTCCATCAATGGGGATGGGCCAATAATCGGCCGTGAAGTGGAGTACCGTACCGTCTCAGGCACCATGTATGACCTGCAGCCTGTGGACAAGGCATCACACAAGATCGGCCACCTGGCACCCGATACAGAGTACGAGATCAGCGTGCTGCTCACACGGCCACTGGACGGGGGCACAGGGGCGCCCGGGCCACCACTCCGGGCTCGCACCAAATGCGCTGaGCCCATGCATGGGCCTCGGCAGCTGAAGGTGGTGGACATCAAGGCCAGGCAGGTGACCCTCCGTTGGGAGCCATTCGGCTATAATGTGACGCGCTGCCATAACTACAGTCTGACAGTGGAGTACAGCGCCCGCGGGACTGGGAAAGACGAGACCCGGGAGGAGGTGTCATACGATGGCAAGAACTCCGCCCCTCAGCATACCATCCACAACCTGACGCCCTTCACCAACCTGAGCGTCAAACTGGTCCTGCGCAATCGAGAGGGTGTGAAGGAGAGCGCCGAGATCCACGTCCAGACCGACGAAGACGTGCCGGGAGAGGTTCCTCTGGACTCCATCCAGGCCAGCGTGTATGAAGAGAAGATCATCCTCAAATGGAGAGAGCCTGCTCATACCTACGGAGTCATCACCCAGTATGAGATCTCATATAAAGCTGTGAGTTCATTCGACCCAGTGCTGGACCTGTCCAACCAGAGTGGCAAGGTGATCAAACTGGGAAATGAGACGAGTCACGTGTTCCTGGGTCTCTATCCAGGCTCGACATACTCCTTCAGCCTGAGAGCCAGCACGGCTAAAGGCTACGGTCCCCCGGCCATCACTCAGGCCACCACCAAGATCTCAGctcctTCTATGCCTACATACGATCAGGAGACGTCTCTGAACCAGACTGACAGCACTGTTACTGTTCTCCTCAAACCTGCCCAAAGCAGAGGAGCACCAGTAAGTGTATATCAGGTGGTGGTGGAGGAAGAGAGGCCCAGACGAGCACGTGGTGGTGAGGCAGAGATCCTGCGCTGTTACCCCATCCCTGTCCACTATCAGAACGCAACATCACTCAACTCTAAGTACTACTTCACAGCAGAATTCCCCTCTGGGGGCATCCCATCCCCTCTACCTTTCACAGTGGGGGACAACAGAACCTACAGTGGCTTCTGGAATGCACCACTGCTTCCCCACAAGAGCTATAGTGTCTACTACCAGGCCGTCAGCACAGCTAACGGGGAGACTAAAATAGACTGTGTGCGAGTTGCCACCAAAGCCGCTATTCTAGTGACGCAGCTCACTACTCCCTACATCCGCATTGCTCCAGCTGCAGGCGACAACCAACTAACAGgGTCGGCGACACACAAACCGAATGCGGTGGAGCCGGAGAAACAGACTGACCACACGGTGAAGATTGCCGGCGTCATCGCTGGCATCTTGCTCTTCGTCATCATCTTCCTTGGCGTGGTACTTCTCATGAAGAAACGAAGAACCTATCACTCCTACACTTATTACCTGAAACTGGCTAAGAAGCGTAAGGAGACGCTGAGCAGCACTCGGCAGGAGATGACGGTGATGGTGAACTCCATGGACAAGAGCTATACGGAGCAGGGCACTAACTGCGATGAAGCTCTTTCCTTTATGGACACTCACAACTTGAACAGCCGCTCTGGATCTTCTCCTTGCTCTCTAACGGTGAAGACAAACACACTGAGCACAACTCTCCCCAACTCCTATTACCCAGACCCCTTTGTGCCCACTGCCATCTTAGTCCCCATTAATGacGAGACGCAGACGGTGGCCAGTGACACCAGCAGCCTGGTGCAGTCTCACACCCACGctcactccacacactccaTGCACTCCACCcactccacgcacacacactctctccggAAGCGTGAGGCGGCAGATGTGCCCTATCAGACGGGTCAGCTCCACCCGGCCATCCGCGTGGCCGACCTGCTCGAGCACGTCACCCAGATGAAGTGCGCCGAGGGATACGGCTTCAAGGAGGAGTACGAGATCAATGAGAGCTTCTTTGAGGGACAGTCTGCACCATGGGACTCTGCCAAGAAAGATGAGAACCGGATGAAGAATCGCTATGGAAACATCATCGCATATGATCATTCCCGTGTGCGTCTGCAGAGCCTGGAGGGCGAGCAGAGCTCCGATTACATTAATGCTAATTACGTTGATGGGTACCACAGGCCAAATCACTACATTGCTACACAAGGACCCATGCAGGAGACGGTGATTGACTTCTGGAGGATGGTGTGGCAGGAGAACACAGCCACCATTGTCATGGTTACTAACCTAGTGGAAGTTGGAAGGGTGAAATGCTGTAAGTACTGGCCGGATGACACGGAGATATACAGAGATATGAAGGTGACGCTGATAGAGACCCAGCTCTTGTCTGAGTATGTCATCAGAACATTCGCCGTGGAGAAGagGGGGGCACATGAGATCCGTGAGATCCAGCAGTTTCATTTCACAGGCTGGCCGGATCACGGTGTGCCATACCACGCTACAGGCCTGCTGGGCTTCATCCGCAGAGTCAAGGCCAAGTCAGCTGCCAACGCTGGCCCTATTGTGGTTCACTGCAGtgcGGGGGCGGGCCGGACAGGCTGTTTCATCGTGATTGACATCATGTTGGACATGGCTGAGAGGGAGGGCGTGGTCGACATCTATAACTGCGTCCGAGAGCTGCGATCTCGCCGGGTCAACATGGTCCAGACTGAGGAGCAATATGTCTTTATCCATGATGCCATTCTGGAGGCGTGTCTTTGCGGTGACACCACCATTCCCGCCAATCAGCTCCGCTCCGTGTACTACGACATGAACCGATTGGATCCGCAAACCAACACCAGTCCAATCAAAGAGGAGTTTAGGACGCTGAACATGGTGACCCCCACGCTGCGCGTAGAAGACTGCAGCATTGCACTACTGCCACGGAACCATGAGAAGAACCGCTGCATGGATGTGCTGCCTCCTGACCGCTGCCTGCCCTTCCTCATCACCATCGATGGAGAAAGCAGCAATTACATTAACGCTGCCCTCATGGATAGTTATAAACAGCCTTCTGCATTTATCGTTACCCAGCATCCTTTGCCAAACACAGTGAAAGATTTCTGGAGGCTGGTCCTGGACTATCACTGCACGTCCATTGTTATGCTCAATGATGTGGATCCTGCACAGctgtgtccTCAGTATTGGCCAGAGAATGGGGTACATAGGCATGGTCCTCTGCAGGTGGAATTTGTGTCAGCTGATCTAGAAGAGGATATCATCAGCAGAATATTCCGCATTTACAATGCTGCTCGGcctCAAGATGGCTATCGTATGGTGCAGCAGTTCCAGTTCTTGGGCTGGCCCATGTACCGAGACACACCCATGTCCAAACGCTCCTTCCTCAAACTCATTCACCAGGTGGACAAATGGCAAGAAGAATATGACGGAGGAGAGGGACGCACTGTGGTACACTGCCtaaatgGAGGCGGACGCAGTGGAACATTCTGCGCCATCAGTATTGTGAGTGAGATGTTGCGACACCAACGCTCGGTCGATGTGTTCCATGCTGTCAAAACTCTGCGGAACAACAAACCCAACATGGTGGACTTACtggATCAGTACAAGTTCTGCTATGAAGTGGCTTTGGAGTATCTAAACTCAGGCTAGCTGTGCTAGCTATCAGACAACAtggacatgctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379728 lncRNA downstream 174959 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA downstream 202731 14627785 ~ 14632171 (-) True G320635
TU379329 lncRNA downstream 383879 14361947 ~ 14451023 (-) True G320317
TU379346 lncRNA downstream 438989 14391988 ~ 14395913 (-) True G320332
TU379304 lncRNA downstream 516577 14318057 ~ 14318325 (-) True G320294
TU379867 lncRNA upstream 28145 15064126 ~ 15065780 (-) True G320767
XR_003403412.2 lncRNA upstream 59696 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA upstream 59696 15095677 ~ 15104460 (-) False LOC113533367
TU379941 lncRNA upstream 193622 15229603 ~ 15230010 (-) False LOC113533479
TU379997 lncRNA upstream 245454 15281435 ~ 15281638 (-) True G320864
XM_026925745.2 mRNA downstream 16029 14807967 ~ 14818873 (-) True LOC113533545
XM_034314827.1 mRNA downstream 16036 14807967 ~ 14818866 (-) False LOC113533545
XM_026925531.2 mRNA downstream 62635 14766090 ~ 14772267 (-) True yju2
XM_026925513.2 mRNA downstream 70087 14748928 ~ 14764815 (-) False shda
XM_026925744.2 mRNA upstream 6725 15042706 ~ 15045084 (-) True LOC113533544
XM_034314838.1 mRNA upstream 156260 15192241 ~ 15213022 (-) True vapal
XM_026925452.2 mRNA upstream 156260 15192241 ~ 15213011 (-) False vapal
XM_026925031.2 mRNA upstream 180747 15216728 ~ 15220876 (-) True LOC113533134
XM_034314544.1 mRNA upstream 186797 15222778 ~ 15231580 (-) False LOC113533479
TU379789 other downstream 89415 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3286463 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4306652 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 5861690 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 5880792 8904014 ~ 8954110 (-) False pitrm1
TU379938 other upstream 191491 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 651277 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 651277 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1321593 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1583652 16619633 ~ 16619734 (-) True LOC113533663

Expression Profile