RNA id: XM_026925763.2


Basic Information

Item Value
RNA id XM_026925763.2
length 2349
RNA type mRNA
GC content 0.44
exon number 10
gene id creb3l3b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14408452 ~ 14429093 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATATGGTGTTTCAGACTTTACCCTAGTAGATAGAGCACCTGAAGAGTCccagaagaaaacagaagaaaacacttAAACTGAAGAAACTGCTCATTGGATACACAAACCAGTTTTGCTGAATCAAGACAAAAGTGAACATGGCACTGCTTTCTGACAAGAGCTCCAATGGGATGGAATTCTTAGATCTCCTCTTTCAGCAAACTGATGAGAACTCAGTTCCTGAAGAGCCTGAGGGTGGCCGTGTTAACCCGGCCTGGCCATTCCCGGATCAAAGTTTACTGGCCCACAGTGACGATGGAGCTGATCAATTCCTGGACTCCttgctgaatgtgtgtgagtgtgtatcagGCTCTAGCTCACCCCAGTGGCCCCCGTCACCCTGCGACAGTGGCATCAGTGATGATCCCCTCTCAGACCATTTGGACagtcctcctccttcctccaaCCTGCTCTTGGACTCCTTCTTCATCTCTCAGCATCACCATCTTCTTCctgtttctcctcctcctcttcagccTCCTCCTCAGTcccaacaacagcagcactCGGGATGGGCCTCTGGCTCAGCAGAGCAAGATATTTCCATTGATGTGGAGGCCTGGGAGTCCAGTCTGTCCTTGTACAGTTCAATGGTTCCTCAGTGTGTGCCAACAGCAGGTCCGAGCCCTGATGCCTCTTCAGTGTTCCAGCTCAGCGTGAAGGATCTGCTCCTCTCTAATTTAGGAGAACCTccCAAGCAGCCCTCTCAGAACTTGCTGCAGGAACTCGTTCTTAATGATGATGAGAAGAAACTTTTAGCCAAGGAAGGAGTGTCTCTACCCAGCCAGCTTCCCCTCACCAAGAATGAAGAGAAGATCCTGAAAAAGGTTCGCAGAAAGATTCGGAACAAGCAGTCTGCACAGGAGagcagaaagaagaagaaagagtaCGTTGATGGCCTTGAAGGGAGAATGGCTGCCTGCAGTGCCCAGAATATGGAGTTGCAGAAAAAAGTGATTCAGCTGGAGAAAACCAACATgTCTCTAATGGAGCAGTTACGAAGGCTGCACGCCCTGGTTATGAACAGCTCTAACAAACCTGCTCAGACTGGCACGTGTATTCTGGTGCTactgctgtctttctctctcatccttTTCCCAAGGTTCCAACCACTGTCCCACAGCAGGACCAGTGATCCAGCTGACTTTAGCACAGCCAAAGTTCAGTCACGCTCACTGCGCTCTGTGGTAGAGGTCCATAGTCTGCAGCCAGTCCCCTCCATGGACAGTCACATGGAGAAAGCCACCAACGTCATTTCCAAGATGCACATCAGGCCTGAATATGCTGATATGGACCCCCTACACCACAACCGAAGTTATGGAGACCGGAAGCATCACCATGGTGACCCAATCACTGGGCACATGGCCATGCTGGGTTGGCATAATTCACGGCCATGTCATCAGAAAgacaggaaatgatgtcataaGTCAACTGAATGGACAATCCATTTGACATTTTAAGTGTTGCTCATAAAGGAGAAAATTTGAGTCCTTGTTTTTGCAGAACTGGTTCAGATGAAAGCAGCATCATGCTCATTAACACTGAGAGTTATCAGTGGTTTGATAGTCTCATTATCCTTACAACATTGACATCTGACTTGTATTGATATGAGTAtacatgaaatatgaaattacaGTAGTAGTTTCCACAAGTCAAGTTCAGATTTTGCTCACAGAGTGGTTCGGTCAGTAATAATTGTGGCAAAGTTGTTgtattgttttgctttttccttCTGTACCTGTGTTATTTCTGTCTGAATCAGTTAACTGTCAAACAGAGGTTTCTGGCTCATGTTGGCTCGATGTCAAAACTGTGTCGCTCCATGTACGATATTTAAGATAACCAGCACAGGTGGAGTCAGTAAGACAGCAGTGCTCCGTGAGAACAAGGATTAGGGGTAAATCTTCAGCACATTAAGTAGTAGAGAGCTTGTGTCATGACTGAATAAACAAGGAATTATATCttccttacaaaaatgctgaatttcaatgtaaatcaacaaaacaaacaaaaaaaaaacaccccacaACATATCAGTAGATGtcaatagaaataaaaaagcaaatacaaaaccaaaaaaaggtAGACACAGcagataacaaaaaaaaaccctattaAGAATAGTGAAACTATAAAAGTTATGTACATACAACACAAACAAGGAACTATAGGATACATACTTGCATTTTGagttaaaagacaaaaatatgtgCAGGGTGTTATGTTGGGATGAAACATGCACAGAAGTagaacattaaagaaaaatcatAGAGGATAAGTGCTGTAAATAAACTGACAAAGACTGGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379346 lncRNA downstream 12539 14391988 ~ 14395913 (-) True G320332
TU379304 lncRNA downstream 90127 14318057 ~ 14318325 (-) True G320294
TU379303 lncRNA downstream 90415 14317692 ~ 14318037 (-) True G320293
TU379301 lncRNA downstream 94127 14314000 ~ 14314325 (-) True G320291
TU379299 lncRNA downstream 103342 14304812 ~ 14305110 (-) True G320289
TU379728 lncRNA upstream 142591 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA upstream 198692 14627785 ~ 14632171 (-) True G320635
TU379867 lncRNA upstream 635033 15064126 ~ 15065780 (-) True G320767
XR_003403412.2 lncRNA upstream 666584 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA upstream 666584 15095677 ~ 15104460 (-) False LOC113533367
XM_026925764.2 mRNA downstream 3629 14401929 ~ 14404823 (-) True rxfp3.2a
XM_026925666.2 mRNA downstream 71869 14142203 ~ 14336583 (-) True LOC113533496
XM_026925900.2 mRNA downstream 477314 13909865 ~ 13931138 (-) True acss2l
XM_026925218.2 mRNA downstream 588991 13807775 ~ 13819461 (-) True napgb
XM_026925505.2 mRNA downstream 697755 13705300 ~ 13710697 (-) True LOC113533381
XM_034314772.1 mRNA upstream 242179 14671272 ~ 14705998 (-) False plpp2a
XM_026925467.2 mRNA upstream 242179 14671272 ~ 14702715 (-) True plpp2a
XM_034314771.1 mRNA upstream 242179 14671272 ~ 14702709 (-) False plpp2a
XM_026925099.2 mRNA upstream 280029 14709122 ~ 14725998 (-) False LOC113533171
XM_026925098.2 mRNA upstream 280029 14709122 ~ 14725998 (-) False LOC113533171
trnaw-cca_17 other downstream 2860013 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 3880202 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 5435240 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 5454342 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 5522743 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 302819 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 798379 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 1258165 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 1258165 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1928481 16357574 ~ 16367004 (-) True G321462

Expression Profile