RNA id: XM_026925767.2


Basic Information

Item Value
RNA id XM_026925767.2
length 7847
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113533554
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15412738 ~ 15460090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatacagagagagagagagggagagagagagagagagagagagagagagagagtcattttGTGGGAggctgagaaaagagaggagcAGGCACATTTCCCACTCCCATTTTGTCATCTTTAATGTCCTTGCTATTTAACGAAGACTAGTTGCTACATCCCATtacacgtctcacacacacacacacacacacacacacacaccaggctgtaggaggaggagaggacagAGTGATTGGCATGTGGGGAAAACACACttgcacctacacacacctggagcagagGAAAAACACGGACGCCGTCGCCTGACTTatggaaagagggaaagaggtGACCGGGAGCGCgcgacaaaacacacacacacgcacgcacacacacacacacacgcacgcaaatacctatacatacacactctcactccgACAGACAGATGTGGCGGGAGCAGGAGGCACGCTCCAGCTGTTGGTGTGTGGTAGACTGATTCATCTAGAGTGAGGTGGTGGGGTGCTCATGGCTGCCTTATGGGGCCTGGGCTGGCTGGGTGTGAGCCTCACCCTGTTGGCCCTCGCCCCGGTGTGCCAGAGCTGCCCGCCACGCTGTGACTGTGTGGCTCAGCTCCGCTCCGTGTCCTGCCAGCGAAAGCGTCTGTCGGGTGTACCTGAGGGCATCCCTACAGAGACCCGGCTGCTGGACCTCAGTCGGAACCGGCTACGCTGGGTGTCACCAGGAGATCTGGCACCATATCCACGGCTGGAAGAAGTGGACCTCAGTGAGAACCTCATCTCCACTCTGGAGCCCAATGCCTTTGCCAGTCTACAGGCACTGCGAACACTGCATCTTCGTGGAAACCAGCTGAAGCTGGTGCCTATGGGCGCCTTTGCTCGCCTGTCAAACCTCACTACCCTAGACCTGAGTGAAAACAAGATTGTCATCCTGTTGGATTATACATTTCAGGACCTGCACAGTCTCAAACACCTTGAGGTTGGTGACAATGACTTGGTCTACATCTCTCATAAAGCTTTCTCAGGATTGCTGGGTCTGGAAGACTTAACCATAGAAAGATGCAACCTGACTTCAATCTCTGGTCAAACCCTATCCTACCTGCGCAACCTGGTCACCCTTCGATTACGCCACCTCAGCATCTCTACCATCGAAGACCAAAACTTCCGCAAGATGTCCGCTTTGCGGGGGCTAGAGATAGACAATTGGCCATACTTGGAATACATCTCCCCCTTTAGTTTCCAGGGTCTAAACTTGACCTGGCTGTCCATTACTAACACCAACATTACTGCAGTCCCTTCTGCTTCTTTCCGCAACCTTGTCTACCTGACATCCCTTAACCTCTCCTACAACCCCATATCTGTGCTGGAACCCTGGGCGTTCAAGGATCTTATAAGGCTGAAAGAGCTACACATGGTCAGCACTAACCTGCAAGCTGTGGAGCCTCATGCTCTGGGTGGTCTGAGGCAGATTCGGGTGCTGAACCTCTCCAACAATGAGCTGGTCACACTGGAGGAAAGCTCCTTTCATTCCGTCAACAGCCTTGAAACTTTACGAGTAGACGGAAATCCACTTTCTTGCGACTGCCGGCTTCTCTGGATTCTGCAACGCAGACGCACTCTGAACTTTGATGGGAAAATGCCGATCTGCGCTGCTCCACCTGAGGTACAGGGTAATATTCTGAGCAGCTTTCCGGATTCTGCATTATTTGACTACTTCACTTGCCAGAAGCCGAAGATTCGCAACCGGAAGCTTCAACAAGTGACAGTGCGTGAGGGTCAGTTGGTGTCCTTCCTGTGTCGTGCTGATGGTGAACCGGCGCCTGCCATCATCTGGATCTCACCACAGCGGCGAAAGATCACCTCGAAAAGCAGCAGCAGGATCACAGTCTTACCAGGTGGAACGTTGGAGATCCGATATGCCCAGGTGACTGACAGCGGCACGTACATCTGCATCGCCAGCAATGCAGGTGGCAACGACACCTACTTTGCCACACTGACGGTGAAAGGACAACCAGTGGACCACGCTCTGTTCGCCAACCGTTCTCTGTATGCGGTGGACTTTAATGACACTGGTCTGAACAGTACACGTGTCTTCCTTAAGTTCACACTTGACCTCACCACAATCCTGGTGTCTACAGCCATGGGCTGCATCACCTTCCTGGGTGTAGTACTCTTCTGTTTCCTGCTGTTGTTCGTGTGGAGCCGCGGAAGGGGCCAACGCAAGAACAACTTCACAGTAGAGTACTCATTCAGGAAGACAGAGGGGCCCACTACCAGTTCGACCTCTGGAGGGACCCGCAAGTTCAACAtgaaaatgatatgaaacaACGCAGCCAGGGGCCACCTGGGGGAGGCATAAACAcccaacataaacacacagctctgactCGCAGTAATATCGGAAGATGTTTTAGGGACTAATGTGATTAAACTTACCTTGATCTCACTGCCTTTGGAAAAGGTGTTAATATTTCAATTAAGTCACTTGGATTTGATAAGCTAGTAAGTTTCCTTTACCTAAACCTTATTTGCTTGGATGGTTGGTTGCCATTGTTACAACGATTTATTACTATTGCTAATGATTTTGTTATGCAAAATTTAAACACCACCTTAGAGATATATGACCACCAACCAATGTTGCAGTAAAAATCCATTAATGaatttaatatacaatatagtGGTTCTAACAAAATGACATGCAAATTGAAATGCTAATTTAGAAAATACTGAATGCACAAATAGCATTTGTcatgttattaaattaaacaccCATCATGCTACAGTTGAAAAACCAACTGGCCAATCAAATGGCTAAAGCCATTGAATCATGAGTTTATGAACTACAAGCTTGGCTTTCTGTCATGTCTGCGATGAGGTGCTGTGTAAGTTGGGACAAGCACACTGGCCGCAACACTGTGAGTGCACTGCTGCTACTGCCGTACTGGTATTCAGTTAGCAGCATTGTACTATAGTGGATATAAGCTAATGTGCAGCCAGAACCTCAGGGTCTGGTTAGGAAGCCAAGCCTTGGGTACTGGCTGCACTGTTAGTGGATGTATAGTGCTTATACCAGGCTGGTGGAGGGCTGATATGGGGTATTCTCTCATATCCTCTCCATCGCCTGGCCTAGGCACGCACCGATGACCCATAAGCCTTCATGGGGGGAGGCTGCGGGCATCAGGTCCGTTTGATGTCAGACACTTGCTGTATGTACATGTCtacaaatgtacattttaaccCATTATCAAGCAACACCTGCACAATACAGTTATAGCTTTATTTGTTTACAATGCATAGTACTATGCAGGGAAGATGTGAGACATACACAAGCTTTCTTCAGCACACTTGAGTTTTCTTGTGTTTGCATTTCAGGGAATGGTAAAATAATATGACCAgagcttgttttatttttctattaagCTACTGTATAGACCTTTGTTTTTAGGCGAATGTCATTAATTAGTGAATATGTTAATTTGAGAAGAATGTTGTGTTCATGGTTATTGCCTTAGCTTTACCATgcacattcatttaattatgctAATTACTGCTTGGTTTTATTTTGCAGGCACAGGCAGTAATAGCATCAAATGCAATAACAGAGAAAATCTGGTTTACTGCCATTTGCTTTTGAGACTTTTTATTGGATTAATAATGTAACATAGGCATGACTCTTTTCACGGTTATACTGAAGCAGTTCTTTCTAAAGTTGGCACATTGAAAAACTcaaaataacaaatcagatgCAGACATAAACATGATGTGTCATTTAATGCCATTTATTAAAGGTGTTGAGAAGTTTTAGATCATTTTATATAACATCATGACAGTAGAAACACATGGAACACACTTATATAAGAAACACATACATAGATAAGAATGGGTGATCGGTGATGCtgtgatcatcatcatcatccctcTCCTTTTCTGACTTATTTCTTGGCGGCCAGTGTGCGAAAGTCTCTGCTTCTCCTGCCCAGTCTTCATCCCCCCATTAATCCCCGTTCCTGCACCCCGACTGGGTCTCAATGAGAGTGGGGTCCCTGGCTGGAGTCCATAGATGTAAATGAAAATCATGACACCCATCTAACCCATGTGTATTTGACTGTAGAAGGTATTTCTCCCTTTATGTGTTTAGTTCATATGTGTTTTGTacttattctttttattattaatgtttttaaaattgctgGTACTACAGATGTTTAATGTTAGTGATCTGAAGGATGATCTGTTCTCAATACTACGCTGTTTGATTTGGAGCTTTGGTGAGGTAAGAGggtataatatgatataaaatcaagctccagggtccctggttcaaacCTGAGCTCGGGTTGATGTCTCTgttgagttttgcatgttctccacatcTCCATGTGagttcctccaggttctccagtttcctcccaattCCCAAAAACAGgagctggtaggtggattggctatgctacaTTCCCcctaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgagctgtgatggactggtgcccCATCCAGAGTCTATTTCCGAATCATGCCCACTGTTACTCGggctccaccatgaccctgaccaggataaagcagttactgaatgaatgaatgaatgaatgaataaaagtcTAAGGACTAAGATCTAGGACTATGGACTAAGGCTGTGCTGCCTTGTAATACACTAAACACAGCAATTTCCTTCTACCAAAAGTCAACAACAGTTGTGACATTGAAAATGATGACAGTCTTTATCTAAAATGTGGTGTTGAGAACAGATTAACAAACCAAAGAGCCATGAGTCGAATGCTTATTCTAGGTAAACTCTTCACTCTGGCGCCACCCCTGAAACCTAGCTAAATGTTCTCAGACCTCACCGATATCATCAGCAGTGCAGTAGGATGGATCGTGTTCGTCATCAGTACAGTCGATGTTATCCTTGTGGCCTGTGACTCGGTGTTGTTCGTTTGGTTGATTGATCAGATTTGTTTCCTAGTTTATTAGCTTTTTGTTAGCGTTAGCTCCTAGTCGTGCAGTCAGTCACTGTGTTTaggtgtggtgtggtggtggATGGTGAGAAAGGAGGCTCAGCCGGGGATGTGACTCCATACCCTCCCGGCGTCACATGACCCCTTATATGCCGACCCAGTTTTCCTCTTTACGACACCAGCGGCATCCACGGACTTGCGTAGCAGCTGGAACACTCTGTATCTGTCATGAATACATTGATTTACTGTTTGCACTTCAGAATGCAGAATGGAGTGTGAAATGCAGACAGATTGGGCGAGAATGGGATCTGTCAAATTGGGAAGTGTTTCTTAGTAAATTTAACAGTATTGAAGAAAAGGTGAGATGTTTTTAGCATGCTGCAGTTGCTCTTCTGATGCGAAGTGATGTTTAAGTAATGAGAAATTAAAATACCATGtataatcacatttatttaacttctAATATCATATGGTCAGGTATGAACTTGTTCAGTAACTACAAACTTAACTACAAAGCATTTGGtctgtttaaaaatatagattCTTAGGGCAGGAGAAAAGTGTGACATTTCTGATGGAACAATTTCTTCCTGGCAGTGTTTGACAGTTTTCAGATCTCATCAAATACATTCAGTGGAGCTGCTCCACTTCTGTCACTGCCTCTGTTCTGCCCCTGTGCTGAGTGCATCAGCTGTATGgatgatagacagacagatacactcatttttctctctgtctctgaggaCTGAAGCTCTGACACCTGCCTCCCAGACACACTTTGCAGCAATAGCATAAAAAATGGATGGAGGAGcttaaaatatttcatcacTTGGGTGGAAATCAGATTAAAGTTGCTTATGAGGAGTAGctattaagttaaaataattactaatattATGTAAGTGGTAAAAGAGTACTCTTTTAAGTATAACCTGATGTTATACTTTTTAgttgtgcattttaatcattttctgcATAAGCTTACACACGAAATGCCCAACTTTGACCCGTATGAGTGCACAGACTTGATACTTCAAATATTATTATACCAGATTGTGCCGGAGTAGTTATTTGTACTCAATATCATTTCATGTTATAGATTTGCAGTAGAAACCAGACATTTTCCTCATGCTGATAGTTGTGTCTCATTTACGCAATGAgcagaataatatttttttctctgagctTCAGAAAGTAGGTCTAATGCTCCCTCGCCCCCTCAACAGTCTGCTCTTGTCTGAACTTTCCTTCCCGCATACACAGGCAACAGGAGACCCCTCATTTTCAGatacccacatgcacacaccttcATGTCCCTTTTTGCCCATGCAAAGAAAGATGTGTGTCTAGTTAATGCAATGACATCATCACAATACCTTGATGAAAGCTAATAACATCACTTAAACATGTAGGCCTTTAATTTTAATCTAGAAACatgaatgaaacatttaaattattcaCTGAAACGAACCTATTTTTGGGGAGACAGTGCTAATTTTACAGTGACATTTTGACTAATGCTGTTAGGATATACTTCTATTCatcattttttgcttttttcaccAGTATGTGTCTGGGTGGTGGATGTCAGTTCAGTTTTTAAAGGGACTCATTTTACATTAAAGAGTATCAAAACATAGTatttagatttctttttttctttctttctttttgagcCTGACAAGTAATCATCTCATAAaaggctgcgtcccaaaccgtATACAAACAAACTAAATTGCAGGCTATGTCAAAATTCTAGCTGTGACAACTACAATACTGTAGTTACAATAATGCTGTGGCTTTGGCTACTATTTTGactagtttattatttaatgatgtATACAGATAGGACATAGCCAAAGTTACAGACCATACAAATTAATAACAGGCTTATAAGATATTAAAAATGTGACTCTGCTGCCATCTGCAGGCGACTACATGTAATAGCATGAATGATATTTTCCccttattatactgtatatgtgaattTACATAAAGCTTATTACCTGCCATATGCTCTAGACTATTTGACACAGAGCAAATTGTGACTGTTagcttcaaaaataaaataaaaaatattcaaataataataataacactgataTAGTTATGTTTAGTAGAAGGTTTAACTCATTTGGGTTGAATTTTGCGAAAGTGTAACGAAAGtttaaatttagaaatatttttgatttttttttttttttgcaaacaatAAAGACAGTTGTAATATCTATTCATAACTGTGAAAGACTGACTGGAATTAGAATAGGCCATATGATCAATATTTAAAGTGCCATGGGTTTTGGTGACATACTTCTTGTTAATGATTTGTATTTACGACCAATAAATCTTGTTAAGAGATTAGGAATTATACTGTTGAAAAATTTCTCTCTTGTGAACTAGCGGATCTGTGTGATCTATGCATGCCTCTCCTTAAAAACTTGCCAAACACACTTGTTCTTGTGTAAATCTCTTTTCATGTCTTTAAAGCATACTGCGGGgttggatgaaaaaaaaaaaacattatccaGGATATTAATCCTTATGAATAAGAGCCATATATGTGTGCACGGTTTCCTGCTGGTGTGatctgctttaattaaaaaagtactgACTGATTTTCAGAACTAGGCCTATTATTTGTATACATCTTTTCTCTTCCAGGGACCAACATGTTTGCtgttagtttctttttttcttactttgtcTTGCTTTAAGCATTTATACTATGTTTCTATGCTGACACACAAATCCATTGGAGactggaggttttttttatacatgtcCTTGCAGAGGTTTATAATATCTTGCTTTCTGgtctctgatttttttcactcagtcctactgattaaaaaaaa

Function

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379980 lncRNA upstream 71531 15340566 ~ 15341207 (+) True G320848
TU379974 lncRNA upstream 101929 15310604 ~ 15310809 (+) True G320843
TU379971 lncRNA upstream 110008 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379931 lncRNA upstream 159184 15249515 ~ 15253554 (+) False fcer1gl
TU379908 lncRNA upstream 186666 15223871 ~ 15226072 (+) True G320797
TU380071 lncRNA downstream 1764 15461854 ~ 15463232 (+) True G320935
TU380086 lncRNA downstream 83807 15543897 ~ 15546092 (+) True G320949
TU380088 lncRNA downstream 106464 15566554 ~ 15570473 (+) True LOC113533167
TU380114 lncRNA downstream 110604 15570694 ~ 15571089 (+) True G320977
TU380120 lncRNA downstream 135934 15596024 ~ 15596226 (+) True G320981
XM_034314712.1 mRNA upstream 74760 15332702 ~ 15337978 (+) False sf3a2
XM_026925548.2 mRNA upstream 74760 15333130 ~ 15337978 (+) True sf3a2
XM_026925661.2 mRNA upstream 86680 15321461 ~ 15326058 (+) True tpgs1
XM_026925777.2 mRNA upstream 91754 15313865 ~ 15320984 (+) True LOC113533560
XM_034297699.1 mRNA upstream 91754 15314120 ~ 15320984 (+) False LOC113533560
XM_026925707.2 mRNA downstream 43543 15503633 ~ 15511742 (+) False pias4b
XM_034314822.1 mRNA downstream 43546 15503636 ~ 15511913 (+) False pias4b
XM_026925705.2 mRNA downstream 43548 15503638 ~ 15511913 (+) True pias4b
XM_034314821.1 mRNA downstream 44235 15504325 ~ 15511913 (+) False pias4b
XM_026925701.2 mRNA downstream 54322 15514412 ~ 15521221 (+) True map2k2b
TU379509 other upstream 583967 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1517073 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1517073 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2639871 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3839841 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 408926 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 469862 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 640443 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 651946 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 671245 16131335 ~ 16132364 (+) True G321257

Expression Profile