RNA id: XM_026925801.2


Basic Information

Item Value
RNA id XM_026925801.2
length 2983
RNA type mRNA
GC content 0.53
exon number 10
gene id cactin
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13285372 ~ 13294978 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACGCGAACAGCCATGGAGTCGAAGAAACATCGGCGGTCCAGGTCTCGATCCCGCTCTAGGGAAAGGAATAAAAGTAGGGTAGTTAGATCGCGATCTCCGGAGGATAGGCACGAAAGAAATCGACATGGAGAAAGTTCTCGAAGAAGAGCTCGGTCAGAGAGCAGCGGCTCGAGGAGCAGCGGCGCTTCCAGAGAGCGAAGACGCAGAGCAGCTGCCCGCTCGAGTGATTCAGACAGCGACAGCCGGGGGAGGAGACACCGCTCGCGCGGACAGtctagagacagagacaaCTCACCGTTTGATGACCGCagtaaaaagaaacacaagaaCAAGAGTCAAAGGAAGGAGAAACGAGAACACAAGCAGAGCAGAAGTTCATCTCGTTCCAGCACACGCTCCAGTGTGGAGAGACGGCGCGTGAGGGACGGAGACAGCAGCGAcagagacaggaggaggagaCGGAGGAGTGCTGAGCGCAGGAGCCCCAGCAGAGAGAGACGGCGGGAGCGAgatgaagagaagaggagaagcagAGGGAGGGAAAGGAGGAGCGAAGACAGGGACCGGAACAGGAGGAGGAACGATCGTGATGACAGCAGGGAGAGACGGCAGAGGAGGAGGTCGCACTCGGGTTCGTCGGTGTCCTCCGGGTCTTCTGCTTCTGAGCAGGGTGACAAAAAAGAGGAGCAAGTTGCTCTGTCAGTCAAAGAGGAGCAGAAGAACCAGAAGGAGCTGATGAAGGCTTTGGAGACTCCTGAAGAGAAGAGAGCTCGTCGGCTGGCTAAGAAAGAGGCCAAAGAGAGGAAGAAGCGTGAGAAAATGGGCTGGAGTGAAGAGTACATGGGATACACTAATGCAGACAACCCGTTTGGAGACAATAACCTGTTGGGCACCTTCAAATGGCAGAAGGCTCTTCAGATGAAGGGAATAGGGCACTTGAGTGAAAAGGACCTGAAGGAGAGAAACAAGCTTATCCAGGAGGAGAATCGCAGGGAGCTGCAGAAGGTGAAACAGTTACGTCTGGAGCGAGAACGGGAGAAGGCCATGCGGGAGCAGGAGTTGGAgatgctgcagagagagaaggaagccGAGCATTTTAAAACCTGGGCAGAGCAAGAGGACAACTTTCATCTGCACCAGGCCAAGCTCAGGTCTAAGATCCGTATCCGAGATGGTCGAGCCAAGCCCATTGACCTGCTGGCCAAATACATCAGCGCTGAGGATGATGACTTGTCTGTAGAGATGCATGAACCGTACACTTTCCTGAACGGACTCACTGTCACAGACATGGACGACCTGCTGGAGGATatcaagGTGTATATGGAGTTGGAGCAGGGGAAGAATGTGGATTTTTGGAGGGACATGACGACTATCACAGAGGACGAGATCAACAAACTGCGCAAACTGGAAGCTTCAGGGAAAGGGCCAGGTGACCGTCGCGAGGGGATCAACACTTCAGTGAGTACAGATGTGCAGTCTGTGTTCAAAGGTAAAACATACAGCCAGCTGCAGGCGCTACACATGAACATAGAGAGTAAGATCCAGGCCGGCGGCTCGAACCTGGACATCGGCTACTGGGAGAGCCTGCTGCAGCAGGTGCGAGTCTACATGGCACGGGCAAGACTGAGGGAGAGGCATCAGGAAGTCCTCAGACAGAAACTCTATAAGCTGAAGCAGGAGCAGGGGGTGGAAAGTGAACCACTCTTCCCCATTATCAAAGAGGAACCTGAGGCTGAGGAGCCAGCtacaAATGAAAAGGAGCCTTCTAGATCGTCTCCCTCACAGGCTGCTGCCGAGTCGCCAGAGCAGGCGGAGGGGAGAAAAGAGCATGAGGAAGAGGcgaatgagaaagagagtggAGACGAGAGGCCAGGGCCGAGCTCCAGAGCATCtggggagaaagagggaggtgagggaggaggagagggagacgAGGAGGGAGAGAAAAGCGGAGCAGTGGAGGCTGTGCTGACTGAGGAGGATCTGATCCAGCAGAGCCAGGCTGAGTACGACTCGGGCCGTTACAGTCCCGTGCTCCTGCAGCCCTCCGAGCTCCCGCTCGACACACACGTCATGGACGCCGAGGAAGACCTCCAACGCCTACAACTCGCCCGCAGACAGCTGCAGGTCACAGGCGACGCCAGCGAGAGCGCAGAGGATGCGTTTGTACGACGTGCAAAAGAGGGCATGGGGGGTGACGAGGCGCAGTTCAGCGTCGAGATGCCCCTCACTGGGAAAATGTACATGTGGGCTGACAAGTACCGGCCACGCAAGCCTCGCTTCTTCAACCGTGTGCACACAGGCTTCGAGTGGAACAAGTACAACCAGACGCACTACGACTTTGACAACCCTCCACCCAAAATCGTCCAAGGTTACAAGTTCAACATCTTCTACCCAGACTTGATCGACAAGCGCTCCACGCCGCAGTACTTCCTTGAGCCGAGCCCCGACAACAAGGACTTTGGCATCCTGCGTTTTCACGCTGGGCCGCCCTACGAGGACATCGCATTTAAGATCGTCAACCGCGAATGGGAGTACTCGCATCGACACGGCTTCCGCTGCCAGTTCGCCAATGGCATCTTCCAGCTGTGGTTTCATTTCAAGCGCTATCGCTACAGGAGATGAGGGGCTGAGGCTCAAGTTTGAAGACATCTGGACAACCAGTTACATGATGAATcttgtatttatgtataaattgcTATGTGAATTCTTAAGTCTACTTTCACAATGCAGTGCAGTATTTTGAGAACATTGTGCAAAGCCATGTTGCGTCTTTACACCAGGCCTCGTGAGAACAAGAGTAATTTGAAAGAAATGGGCGAACAGATGAGAACATCGTTCCTGTACTGAAAGTGATGGAAAAGcaaattctgtatattttttgtattgtattggtATTGACTGACTATTCTCAAATAATCATATTCGAGTGTTTGGCTTTTTATGATTTTGCAACAATAAAAATCTTTTCTTAACTTGT

Function

GO: NA

KEGG:

id description
K25058 CACTIN; cactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378470 lncRNA downstream 141101 13144063 ~ 13144271 (-) True G319568
TU378461 lncRNA downstream 148783 13136385 ~ 13136589 (-) True G319559
TU378459 lncRNA downstream 149512 13135604 ~ 13135860 (-) True G319557
TU378446 lncRNA downstream 166261 13118788 ~ 13119111 (-) True G319544
TU378398 lncRNA downstream 215850 13069299 ~ 13069522 (-) True G319496
TU378512 lncRNA upstream 10551 13305529 ~ 13309043 (-) True G319606
TU378596 lncRNA upstream 127373 13422351 ~ 13425952 (-) True G319673
TU378597 lncRNA upstream 133033 13428011 ~ 13428963 (-) True G319674
TU378684 lncRNA upstream 292113 13587091 ~ 13587531 (-) True G319754
TU378700 lncRNA upstream 317542 13612520 ~ 13615743 (-) True ccl25a
XM_026925700.2 mRNA downstream 120155 13161536 ~ 13165217 (-) True LOC113533516
XM_026925491.2 mRNA downstream 285385 12986262 ~ 12999987 (-) False cdc34b
XM_026925492.2 mRNA downstream 285432 12986262 ~ 12999940 (-) True cdc34b
XM_026925673.2 mRNA downstream 320591 12940528 ~ 12964781 (-) True kcnj9
XM_026925923.2 mRNA downstream 357301 12908453 ~ 12928071 (-) False LOC113533649
XM_034314616.1 mRNA upstream 11799 13306777 ~ 13377178 (-) False LOC113533154
XM_034314611.1 mRNA upstream 11799 13306777 ~ 13339854 (-) False LOC113533154
XM_034314612.1 mRNA upstream 11799 13306777 ~ 13339854 (-) False LOC113533154
XM_034314613.1 mRNA upstream 11799 13306777 ~ 13339854 (-) False LOC113533154
XM_034314614.1 mRNA upstream 11799 13306777 ~ 13339854 (-) False LOC113533154
trnaw-cca_17 other downstream 1736933 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2757122 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4312160 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4331262 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4399663 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1436934 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 1932494 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2392280 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2392280 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3062596 16357574 ~ 16367004 (-) True G321462

Expression Profile