RNA id: XM_026925803.2


Basic Information

Item Value
RNA id XM_026925803.2
length 866
RNA type mRNA
GC content 0.44
exon number 6
gene id cib3
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16385427 ~ 16392280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGGAACAAGCAGACCATTTTCACTCCACAGCAACTGGACGCGTATCAGGACTGTACGTTCTTCACCAGAAAAGAAATTCTaagGCTCTTTCATAGGTATCGCGATTTGGCCCCACAGCTCGTCCCGCTCGACTACACCACCCAGCCAGATGTGCGCCTGCCCTATGAGCTGATTGGCAGCATGCCAGAGCTGAAGGATAACCCGTTCAGGCAGAGAATCGCAGAAGTCTTTTCAGAGGACGGAGAAGGAAACATGACTCTAGATGATTTCTTGGATATGTTCTCAGTGCTGAGCGAAATGGCACCAAAGGATCTAAAGGCCTACTATGCATTCAAAATCTATGACTTTAACAACGACGACTTCATTTGCAAATCAGACCTGGAGCAGACCTTGAACAAGCTTACGCGGAATGAGCTGACCGAGGATGAAGTGAGGATGGTGTGTGAAAAAGTCCTTGACGAAGCTGATATGGACAACGATGGCCGTCTGTCACTGGAGGATTTCCAGCACATGATCGTGAGAGCACCAGACTTCCTCAGCACATTCCATATCAGAATATAAGACAAGTCTTTGAGGACCAAATGGATTAAAGGACAAAGCTCTTCTTTGAACAAACGGAATGTAGACACCACAGGAAATCGAAGATGAGAAGGAGGAAATACACCACCTGGCCTTGGAAAAGTTTACAGCACCCTTCTTCTGAGAACAATGAATCAACAGTGAAATGCATCAAACCAAGATGTTGCACTTCCTCGATCTACACTTCGTGTTTTAGtttccctattttttttatttcaatacaACTTTTGTTTAATGAAAATAAGTATTGTTTCTGAGAACTGAGGATTCAACAGACGCCCTTT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23838 CIB3; calcium and integrin-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380672 lncRNA downstream 10084 16374510 ~ 16375343 (-) True G321465
TU380548 lncRNA downstream 162113 16187976 ~ 16223314 (-) True G321354
TU380547 lncRNA downstream 162113 16192352 ~ 16223314 (-) False G321354
TU380546 lncRNA downstream 194857 16187976 ~ 16190570 (-) False G321354
TU380540 lncRNA downstream 286189 16098868 ~ 16099238 (-) True G321349
TU380675 lncRNA upstream 1928 16394208 ~ 16456123 (-) True G321468
XR_004576910.1 lncRNA upstream 2473 16394753 ~ 16395539 (-) True LOC117595731
TU380677 lncRNA upstream 7020 16399300 ~ 16401527 (-) True G321470
TU380713 lncRNA upstream 126108 16518388 ~ 16520370 (-) True G321505
TU380718 lncRNA upstream 153959 16546239 ~ 16547477 (-) False LOC113533305
XM_034297792.1 mRNA downstream 42590 16336003 ~ 16342837 (-) True LOC113533484
XM_026925546.2 mRNA downstream 58470 16308558 ~ 16326957 (-) True ap1m1
XM_026925892.2 mRNA downstream 155128 16227671 ~ 16230299 (-) True klf2b
XM_026925048.2 mRNA downstream 225211 16147863 ~ 16160216 (-) True atcayb
XM_026925539.2 mRNA upstream 77819 16470099 ~ 16473688 (-) False cirbpa
XM_026925538.2 mRNA upstream 77819 16470099 ~ 16473688 (-) True cirbpa
XM_026925341.2 mRNA upstream 117281 16509561 ~ 16526583 (-) True LOC113533290
XM_034314744.1 mRNA upstream 172428 16564708 ~ 16587816 (-) False stk11
XM_034314743.1 mRNA upstream 172428 16564708 ~ 16587813 (-) True stk11
TU380669 other downstream 18423 16357574 ~ 16367004 (-) True G321462
TU380217 other downstream 661071 15687258 ~ 15724356 (-) False LOC113533563
TU380215 other downstream 667932 15687258 ~ 15717495 (-) False LOC113533563
TU379938 other downstream 1156171 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 1639940 14731912 ~ 14745487 (-) False theg
XR_003403441.1 other upstream 227353 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 581408 16973688 ~ 16973770 (-) False trnal-uaa_3
trnal-uaa_4 other upstream 688741 17081021 ~ 17081103 (-) True trnal-uaa_4
TU381420 other upstream 1107785 17500065 ~ 17500832 (-) True G322080
TU381602 other upstream 1463049 17855329 ~ 17872108 (-) False LOC113546399

Expression Profile