RNA id: XM_026925812.2


Basic Information

Item Value
RNA id XM_026925812.2
length 2378
RNA type mRNA
GC content 0.46
exon number 6
gene id mul1a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10711708 ~ 10719149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAATGGAGTCGCCATCTTAGAAAGGGTCATTTTCCCTTGTTCAGTTTGAATTTAGAGAATACATTCAATTTTCTCCAAAAACGCCAACAGCAGCTCACCACGTGAGGTTATAGTTTCAATCGAAGGCAACAGTATAATGCTGTTTACCTTATATTTTACTGGCCTTaagttttttcctctttaatatttgtaaatgtgtacATGGACTACGCGGGGAGTTATTATACTTTTCAGAGGGTTTTGTCCTGTGactctttcttttccatttgtgGACATCTGTGAATCATTTATAGgtgagcagttgagggttaagggccctgctcaggggcccagccgTGGCGGCTTGGTGCTGCTGGGGTTTGGACTCGTGACCGTCCagtcagaagtccaacatcttacaCGACATTCCCTGGAAGAAGCTCACACCTTGTGAGGATTAACAAGTACGAAAGAAGATGATGGAGGAATTCTCTATTGGgacagtggaggcagtgttttTAGGTTCCAGCATCGCTTTCTCAGGCCTCTTCTATTACCTGTACAGAAAGAAACGCAAAGCTGTGGACAAACTCAATGATGCTCCTCATATGGCTTTAAATGAGGAACTGGTGGATCTTCTGAATGCCACACCCGGGAAGTGTCTGCAGTATGTGGTTATTGAAGGCACAGTGCAGCCCATAGAGGAGCCCCTGAGCAGTCAGTTTAAGGAAGGAACTGTTGGTGTTATTCAGAAACTGCTCCTCCGTGAGCATAAACTGGTGTGGAACAGTTTGGCACGCACCTGGATGGACCGTGAGCGTGTGCTGCACGAGCGTGTGAGCAGCGTGCCCTTTGCTCTGGTGGGAGTAGATGGAGCACGGGTGCGGGTGCTTCGTCCACTGGAGGCGTCTGGCCCTGAGATGGAAACAGTGCATGAGAAGTTCCACCAGGCCAACTATGGCTTTAGTGACCTGCTCAGCCAGTATTTGAGTGGCGAGAAGAGCAAGGGCCAGCTGGAGACAGAGGAAATGCTGAGGGTGGGTGTGTCCATCACCGCTGCTGGGGAGCTCATCCTCGATTCGGACCGCCTGCTCAAACTCCGCCCCCCAACTGACGGCTCCACCTACTTCCTGACCACGGCTGACTTTGAGTCACTCCGGCATGACCAAGAGGGCCAGGCGTCCTGCTGGTGGGCCCTGGCGGGCATGTTTGCTCTGGTGGGCGTCGCTGTGGTTCTGTGGGCAGGGCTTCAATGTTATAGGCGGATCCAGAGgaaatgggagagagagaggatgaagagGGAGTTTGAACGGATaggggagggagaggaggaccTTGAGAATGCATGCGTAATCTGTTTGAGCAACCCAAGAGGGTGTGTGTTGCTGGATTGCGGACATGTATGTTGTTGCTACAGCTGCTATGAGGCACTACCTCAGCCGACATGTCCAGTTTGCAGGCAGGGGATCAGGAGAGTCGTGCCCCTCTATCAGGCCTGAAAATGAAAGTGCAAGAGGTAGTGGATTAAAAGCTCTACAGAACTACtagacactgagagacagaggcCAGGGATAAGATGGGTTATCCTCTACCAGGCCTCAGGCAGAGAGAAGCCAGTggaataagagaaagaaaacccACAAAAGAGAACACCGACAGATAGGAGAGACATGCTGTTGTTTAAAACCTTCTTTATCAACATTTTCAACAAGTTCCTAAAGACTAGCATTTTGAAAGAGTACCATTCACTCTCTGCACTTTCCCcccctcccctcctcctcctcttgtCTTTGTTCTTGCTCTCTCTAGTTCTCTCAAGTCGAAagatttggggttttttttgcgtGCCTACCTTAGATGAAAAAGAGGCTGTTTAAAGTGACCTATAAAAaactttcataaaaaaaaaaaaaccagctccGATTCATATGCTAAGTATAGTTTGTTGTGGAATTACGCCAAATTGTATCGAAAAGCAAAGACCTTCAGAGTGTGTGACAAGGTACTTTTTATATAATGTGACAAATACTTAGCGTctacaaaaaatatttctgtttacatATCACTCATTATGGAGTAAAATCTAAcagaacatttttcttttgacatGTGAAGAAGtgaatgttaataatgttaaagaTAGTGCTTGAGTGCTTGATAGAGCTTGATCCCATGATCTATTGATCGTGTAAGAATAGATGTGTGCATGGAGAGTTTACAATACTGTGATCTTTTCTGTTCAGGAGTCTCATTTCTAGCAGCTACTAAAATTACCAATTTTGACCTTGTAATGGCTTTTGATCTTTTTAATGGAAAACAGGTAattgcctttaaaaaaataaatgttgaatatttgTCATTAGTAAATGTGATCCACATATAAAATCAATCCAAGCA

Function

GO:

id name namespace
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0051646 mitochondrion localization biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005777 peroxisome cellular_component
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0042802 identical protein binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376650 lncRNA upstream 4200 10706814 ~ 10707508 (+) True G318031
TU376619 lncRNA upstream 63515 10647921 ~ 10648193 (+) True G318016
TU376566 lncRNA upstream 129416 10582093 ~ 10582292 (+) True G317967
TU376563 lncRNA upstream 136161 10575313 ~ 10575547 (+) True G317964
TU376562 lncRNA upstream 136556 10574814 ~ 10575152 (+) True G317963
TU376631 lncRNA downstream 11264 10730411 ~ 10734083 (+) False camk2n1a
TU376632 lncRNA downstream 11264 10730411 ~ 10734083 (+) False camk2n1a
TU376634 lncRNA downstream 11264 10730411 ~ 10734083 (+) False camk2n1a
TU376635 lncRNA downstream 11264 10730411 ~ 10734083 (+) False camk2n1a
TU376638 lncRNA downstream 11264 10730411 ~ 10734083 (+) False camk2n1a
XM_026925398.2 mRNA upstream 7216 10655409 ~ 10704492 (+) True vwa5b2
XM_034314588.1 mRNA upstream 7216 10655436 ~ 10704492 (+) False vwa5b2
XM_026925353.2 mRNA upstream 142801 10563821 ~ 10568907 (+) True eif4e2
XM_026925354.2 mRNA upstream 142801 10563821 ~ 10568907 (+) False eif4e2
XM_026925352.2 mRNA upstream 157295 10536431 ~ 10554413 (+) False capn10
XM_034314779.1 mRNA downstream 11199 10730346 ~ 10734088 (+) True camk2n1a
XM_026925735.2 mRNA downstream 119608 10838755 ~ 10860296 (+) True ncapd2
XM_026925863.2 mRNA downstream 142812 10861959 ~ 10878656 (+) True acsm3
XM_026925891.2 mRNA downstream 161094 10880241 ~ 10897751 (+) True map6d1
XM_026925676.2 mRNA downstream 468651 11187798 ~ 11221863 (+) True LOC113533503
TU376560 other upstream 142812 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 148714 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 149094 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 523884 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 733807 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 680737 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 748152 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 828961 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 829968 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 853680 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile