RNA id: XM_026925813.2


Basic Information

Item Value
RNA id XM_026925813.2
length 2017
RNA type mRNA
GC content 0.41
exon number 16
gene id LOC113533584
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12820071 ~ 12832529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTCTCCTTTGACAAGCAAATGAAGACTCTCTTTTCAGTCCTCCAATCTGTACCATCTCTAATGGAGGTTAAGTTACACTTGAGAAGCTTACCTGAGAATTGGGCagctgaagtgatttatttccTCCAGGCTTGTTCTAGTCTACCATTTTTTGAATTGAGAGTGGGCAGTGGAGGTGAAACTCTAGGAATGATCAGAGGAGTAGCTTTGAGGTCTTCTGACAAAAACTCCATATTGTCTTTTGGGTGCCGTCATTTGGATTATCATGACTACCATGGCTGGATATCAGCAACAGGTTATATCACAGATGATGTGCACAGAGTGCTGCCCTGTATCACCCTCACCATAACAAACCACACAGATTTCTACAATGATTCTTGGACAACATTCTTCCATCATTATAACCAGCTTAAAACAATGACTGAGCTTTATCCAGAGTATGATCAGAGCATGGATGAACTGTTATCTGTCATGAACACTATTCCTGGTCTGAAAGAGGTAGAGCTGGCATTCACATTTTTGACAGTTCATGGTGCTTCCAGCATTCTACACCTTATTCAGACCTCGTCCAGTCTGTGTAAGATTGATGTTATTCTGGCAAGGCAAAGAAGGAGAGATCTTGCTGAGGAACAGAATGTCAGGGAAGACTGGAAAAGTTTCCAGGGTGACTATGAAGGGGACAGTGTCGATTCAGACATCAGTGactcaaacagatcagcaaAATTCAGTTCTGGGAGCTATGACACAGATGTGGAGGACTATGGGGACACTGTCTACTTACCAAGACAGCTCAGTTCGGATTCAGAAATAGAAAACTATGACCTGGATCTCTGCTCAGAGCTAAGAATAAGGAAAAACACCAGGAATGAATGCAAGTTGTCCTTGAGATGTAATGGCTCCAATCCTGATACAAAAGCAGTCTTTGCGTACATTTCACTCATTGTATCTGAATATTCAGGGGAGCCTGAAATCAACTGGAGAAGCTTCTTTCAGTCTTACTATGAGACTAAAGGGTTAATTGAGAGAAACCCGTACTTTGCTGAGAAAACAAATGCCTTGCTGTCTTTCCTGCACATCGTACCTGGACTGGAGGAGGTGGAATTTGGCATACATAGTCTAACTGAGAGCTGGGCTCCTAGGatcctctttctctgtcatgCAAACCCCAATATTCATAGTATCCGTCTGCTGTTGGAAAATGATAAACAAATTGAAAAGTACAGTGCCTGCTCATCTTTAACCATTAAAAGAAACTTCACAGACTCCAcggtTACTGTGAAAATCCATGTGCTAAGCAACACCACTATACTATCCCTCATTTACCTCAAGTTACCATGTTCTGAGATCAGCAACCTTGATGGAGCTGGTCTTCTTTACAGACTGAGGTGCCTTGAGGGTTTAAATGACATTAGATCTCAGGAGTACAATGTGCAAATAAATGAGCTAATCTCATTCCTCCACTCTGTTCCTCATCTTCAGAAATTGAAATTTCAGATTGAGAACCTAACTACAACCTGGGCTACAAGGGTTCTTTCCTTTAAAACCTGCCAGAGTCTTACAAAGATCTTtgtgatAACCTCATCATATGACATGTTAATGGAGGAGGCAATCtcagaacttaaaaaaaattggacatGTCAGGACTGTGTTCTGGTTATTACAGGACTGAGATGCAGTAACCCCACTGATAAATGTTCAAAGCAAAACTGGCTACAAGAATGCAACAAAAATGTGAAGCTCTCATTCTGTGGAGGCCATTACTCAGAGGAGCCCATAATGTATGGgcagtgtgagacagacagtgagagagacgaGAATAAATATTACAGGTTTGAGTGCTATTCTGATGTAGCAGAGGAAGATGAATATGAAGAGGAAGATGGAGATGAGTTCATAGATTGAACGGTATATGcttttatgaaaaataacaaattagaGATCAAAATTAACATCTGGATGAATAATAGCCATTTTAATGCAAACTGCAGGCCAAATGGAAAAGTAATGTTATGta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378022 lncRNA downstream 24293 12772649 ~ 12796934 (-) True G319186
TU378012 lncRNA downstream 42001 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA downstream 55236 12764254 ~ 12765991 (-) True G319182
TU377987 lncRNA downstream 172341 12633893 ~ 12648886 (-) True G319163
TU377875 lncRNA downstream 237138 12583865 ~ 12584089 (-) True G319059
TU378345 lncRNA upstream 75950 12908479 ~ 12915491 (-) False LOC113533649
TU378362 lncRNA upstream 156772 12989301 ~ 13021880 (-) True G319467
TU378376 lncRNA upstream 196580 13029109 ~ 13029704 (-) True G319474
TU378398 lncRNA upstream 236770 13069299 ~ 13069522 (-) True G319496
TU378446 lncRNA upstream 286259 13118788 ~ 13119111 (-) True G319544
XM_034297707.1 mRNA downstream 64083 12756704 ~ 12757144 (-) True LOC117595732
XM_034297734.1 mRNA downstream 66975 12752650 ~ 12754252 (-) True LOC113533469
XM_034297706.1 mRNA downstream 94733 12724934 ~ 12726494 (-) True LOC117595730
XM_026925637.2 mRNA downstream 98463 12635057 ~ 12722764 (-) False gpc5c
XM_034297708.1 mRNA upstream 2145 12834674 ~ 12840013 (-) True LOC113533473
XM_034314674.1 mRNA upstream 11551 12844080 ~ 12905436 (-) False svilb
XM_034314673.1 mRNA upstream 11551 12844080 ~ 12903222 (-) True svilb
XM_034314675.1 mRNA upstream 11551 12844080 ~ 12891174 (-) False svilb
XM_034314667.1 mRNA upstream 11551 12844080 ~ 12891174 (-) False svilb
trnaw-cca_17 other downstream 1272788 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2292977 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3848015 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3867117 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 3935518 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1899383 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2394943 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2854729 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2854729 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3525045 16357574 ~ 16367004 (-) True G321462

Expression Profile