RNA id: XM_026925818.2


Basic Information

Item Value
RNA id XM_026925818.2
length 3462
RNA type mRNA
GC content 0.48
exon number 9
gene id pax3a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11596699 ~ 11622845 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGATAAAATGTTTCGCTTCCCAGCGCCGACTCAATCCACACAACAAGTGCGTCCACACGGCTGCGCAGGGCAGAGCTGACTTTATGACTTAGCTGAAGTTTATTTCACGAGCAACATCGTTTCCTCTGGTCTGGATAGCACTCGCTAACTTCGAAGGACTTTCCTGAGTGGGTTTTCCCCACGAAGTTGGTTTTCTGAGGACGTATTACGGTGACATCTCGTCGGCCTCGTCAGAGATAACGGGAAACACCGACACCTGACCTTCAACAGATTCCGCCTGGATCTCTAAATCCGCCGTTCATTGCACCGTTAAGTGGCCTCGTTAAGTGCCGTTCCTTAGGAATTCGGGACATGGCCGCCTTAGCAGGGGGCATTCCCAGGATGGTGCGCCCCACGCCACCCCAAAACTACCCGAGAGGGGGCTATTCGCTCGAAGTTTCCACACCTTTAGGCCAGGGTCGAGTAAACCAGCTCGGCGGTGTGTTCATTAACGGACGCCCGCTGCCCAACCACATCCGCCATAAGATCGTAGAAATGGCTCATCACGGGATCCGGCCGTGCGTCATCTCGCGCCAGCTGCGCGTGTCACACGGCTGCGTGTCCAAAATCCTGTGCAGGTATCAGGAGACGGGATCCATCCGGCCTGGCGCGATCGGAGGTAGCAAGCCGAAGAACACCAGTCCCGACGTGGACAAGAAAATCGAGGAGTACAAGAGAGAGAACCCGGGCATGTTCAGCTGGGAGATCCGAGACAAGCTGCTGAAAGACGGCATCTGCGACAGAAACAACGTGCCCTCAGTCAGCTCGATCAGTCGCACACTGCGCTGTAAGTTTGGCGGAAATGGGGAGGATGAGGAGGACGATGATGAAGTCGAAAAGAGGGAGCTGGAGGAAAACGAGAGACGCGCGAAACACAGCATCGATGGCATTCTGGGAGACAGATCGAGTCATTCAGATGAGGGCTCAGATGTAGACTCAGAGCCAGGTCTGCCCCTTAAGAGAAAACAGCGTCGCAGTCGCACGACATTCACTGCAGAGCAGCTTGAGGAGCTGGAGCGAGCTTTTGAGCGCACACACTACCCCGACATCTACACACGCGAGGAGCTCGCCCAAAGAGCCAAACTTACTGAGGCGAGagtacagGTGTGGTTTAGCAACAGACGGGCTCGCTGGAGGAAGCAGGCAGGAGCCAATCAGCTGATGGCATTCAATCACCTGATTCCTGGAGGATTCCCACCATCGGCCATGTCAAGTCTACAGCCTTACCAGCTTCCAGAAAGTCCTTACTCTGCTTCCTCCATCCCACAAGCAATGTCAGAACAGGCCAGCACAGTGCACAGGCCCCAGCCTCTTCCACCGACTTCAGTGCACCAGAGCGGTCTGGCCACCGCCCCGGGAGCCCAAGACGCTACTTCAGCCTACTGTCTCTCTTCAGGCCGTCATGGCTTCTCAGGCTACTCAGACAGCTTTGTGCCTGCACCGAGCCACTCTAACCCGGTCAACCCTGCTATCAGCAACGGCCTCTCAACACAGGTGATGGGACTGTTGAACCCGGGAGGCGTGCCTCACCAGCCGCAGGgagacttctctctctctcctctcactggTCCTCTGGAGCCCAGTGCGGGCATGGCTGCCAGCTGCCACTCATCACAGAGACTGGAGTCTCTGTCTGGACTGGCCAGCATGCCTTCTCTGCCCAGCTCACAGTCTTACTGCCCACCCAGCTACAGCTCGCCAGCCTACAGCGTTGACCACATGGCACCATACCAGTACAGCCAGTATGGGCAAAgTGCCTTTCATTATCTGAAGCCCAACATCAGCTGAGCAGGAAGAAGTGAGCaggagaaaagagggaaagttCCGGACGCTCTGAGAGAAACCACCTGCTCTTCAGCTCTTCTCCTTGACCTCCGACATCCACTTCCAGATCCATGCCTACCCACAATCCCCCCCTGGCATCAGGACAGTTCCGATCCAGCCGCACCACCCACCCATGCTGGGTTGGTTCTCATTCTGAGTGATTCAGGTTTAGTGTGGATAATAAGGACCAAAGGCCCTCTGTGGTTAGTGCTCCATTCCATGTCTTCAAACGTCTCCCAGCACAAAGCTTACACGACCATTCCAAAGAACGCCATGTAAACAGTGAGGGAGACCGGGAGGTGGAcaaggagtttaaaaaaatttgagaaatgaaattaaagacTGTTAAAGACTGGATATTTAACCTGAAATGACCAGCAGGGAAATGTGTAGGGTCAGGCAGTTGAAATGCCTTGATCTTTTAGGCAAAACTTGTAACTTCACATTACGTCATCTTGAGAGCTTGTTGTCTGACTCGTGATGTGTTTCGGGAAATAAGGGCTCCTTTTTATATGGGGGGTGTATCATCTTCTATTGGCTTCATCAACATTatttacaagtgtgtgtgtgagagagagagaaatggaaagagTGATCTGGCTCCTATGCCCTCAAGTGTCTGATGGAATTTTACTTATGTCAGGAACATCAGTGAAAGAAAGATGTGTCACGCTCACCCATGCAATTACAGTATAGTTAAAAATAGACACTGATACCTAAAAGCAACTAAAATTCCATTGTGCGAAGacatattaaaatattgccATAGGAGAAAGTAGGTGAGAGACGGATATAGtgtatgagagaaagaaaagactaAAGTAGCACAAACTGAAATCCAAAGAAAGTGCAATATACACAATTTATACCTCATACACCAATCTCTTGATTTAATAATTCACATGTAGTTTGTGAAGGAGCAATAGGGAGAACTTCCTAATGAACATTTtgaaacactacaaaaaaaatagcACTCAGAAACAGTAGTTGTGGACCCTGAACTGGAAAAATGTCTTTCCATTCGACAGGACTCAGGTCTGCTAAATCTTACTCTCCTAACACTTTTCAGATTCCACAACCTGCCACAGTGTTCTGTAATGTCTTTTAAATGATCAACACATTCCTGCCAATATTAAgatattttaatcttaaaatgtaaggaataataaaACTGAGGCAAAATAGTGGCATAAAagagactttatttaaaatgggGACAGGTTGTATGATCAGGACCAAGTGAGAAAATCTCAACTGATAagcaaaatgcagaaaaaggTGTGTATTGCTgctttaaataacaataatccttcttatattttatattagctAATTGGGGTAAACGAAACAAGACAAGACAGTTAATTTGTTGTCTTACatcaaacatataaatataaattttcccaTTTCTAAGTTGACCCATCTTTACATTATTGTCAAAGTGAGAAAAAAGTACTTTGTGCCTATAACACAACGTCACCTGTTTTAAGTCTTAAATTCCATGCCGAAGGTTATTTTTTACATCTGCTTTTTATacttatatgatttttttttctttatgactGCATTCAATTGTTGTTGCAAAATGTCTTGTGT

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050936 xanthophore differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377136 lncRNA upstream 192643 11403264 ~ 11404056 (+) True G318426
TU377003 lncRNA upstream 427560 11106795 ~ 11169139 (+) True G318331
TU377005 lncRNA upstream 476872 11112953 ~ 11119827 (+) True G318332
TU376936 lncRNA upstream 587553 11007948 ~ 11009146 (+) True G318273
TU376903 lncRNA upstream 609123 10984227 ~ 10987576 (+) False G318248
TU377440 lncRNA downstream 151098 11773943 ~ 11774148 (+) True G318647
TU377452 lncRNA downstream 176113 11798958 ~ 11799181 (+) True G318658
XR_004580299.1 lncRNA downstream 210463 11833308 ~ 11846411 (+) True LOC117599957
TU377478 lncRNA downstream 247922 11870767 ~ 11870966 (+) True G318683
TU377493 lncRNA downstream 402363 12025208 ~ 12025443 (+) True G318697
XM_026925732.2 mRNA upstream 51974 11535133 ~ 11544725 (+) True snorc
XM_034314760.1 mRNA upstream 63138 11498327 ~ 11533561 (+) True gigyf2
XM_034314761.1 mRNA upstream 63138 11498327 ~ 11533561 (+) False gigyf2
XM_026925545.2 mRNA upstream 117148 11473845 ~ 11479551 (+) True itm2cb
XM_026925186.2 mRNA upstream 131930 11399885 ~ 11464769 (+) False per2
XM_034297705.1 mRNA downstream 793665 12416510 ~ 12428531 (+) True LOC113533522
XM_034314599.1 mRNA downstream 1159692 12782537 ~ 12796824 (+) False LOC113533470
XM_034314598.1 mRNA downstream 1169290 12792135 ~ 12796824 (+) True LOC113533470
XM_026924981.2 mRNA downstream 1345469 12968314 ~ 12982849 (+) True LOC113533117
XM_026925860.2 mRNA downstream 1381949 13004794 ~ 13014554 (+) True abhd17aa
trnag-ccc_6 other upstream 23802 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 47511 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 48520 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 127200 11467299 ~ 11469499 (+) True G318439
XR_004580315.1 other upstream 135631 11399884 ~ 11461068 (+) False per2
TU378000 other downstream 1142210 12765055 ~ 12772867 (+) False G319170
XR_004580321.1 other downstream 2214588 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 2214588 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 3204420 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 4246171 15869016 ~ 15870995 (+) True G321088

Expression Profile