RNA id: XM_026925861.2


Basic Information

Item Value
RNA id XM_026925861.2
length 2969
RNA type mRNA
GC content 0.44
exon number 5
gene id abhd17aa
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13004794 ~ 13014554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATCTCGTTCAGGTTGACACCCTACAATCTGTCAGTGAAACTCATTCATGGAATATCAGCCTGTAACTCCTATAGTAAGACTTATAGTTCTTCCAGCTTGTCTGTAACTCGGTGCTGGGAAGATGAATGGATTGTCAGTCAGCGAGCTATGCGGCCTTTTCTGTTGCCCTCCTTGCCCAAGTCGGATTGCAGCGAAACTGGCCTTCCTACCCCCAGAGCCCACTTACACTTTACTGCCCGAACTGGACTCGCCCCCACCCATGACCTCCAACCAGAGCACCTCGGGCCTGCGTTCTCGGCTGAGccggagaggaggaggaggagacagaGGTGGAGAGGGCAGGTGGAAGCTCCATCTGTCAGAGCGAGCTGAGTTCCAGTACTCCCAACGAGAGCTGGACAGGACAGAAGTCTTCCTGACTCGCTCTAGTCGTGGGAACAAAGTGGGATGCATGTACATCCGCTGTGCCCCCACAGCCAGGTACACGGTGCTGTTCTCCCACGGTAACGCTGTGGATCTGGGTCAGATGAGTAGCTTCTACATCGGCCTGGGCACACGCATCAACTGCAACATCTTCTCTTACGACTACTCGGGTTATGGAGCCAGCACGGGGAAGCCGTCTGAGAAGAACCTCTATGCTGACATAGACGCTGCCTGGCATGCGCTGCGCACCAGATATGGGATCAGTCCTGAGAACATCATCCTTTATGGTCAGAGTATTGGCACGGTGCCCACGGTGGACCTAGCGTCGCGGTATGAGTGTGCTGCCGTGGTCCTTCACTCCCCCCTCACCTCGGGTATGAGAGTGGCCTTCCCTGACACCAAGAAGACCTACTGCTTTGACGCCTTTCCGAACATCGAGAAGGTGTCAAAGATCACGTCTCCAGTGCTGATCATCCACGGCACCGAGGATGAGGTGATTGATTTCTCGCACGGCCTTGCCCTGTTCGAGCGCTGCCCCAAGGCTGTGGAGCCTCTGTGGGTGGAGGGAGCCGGCCACAACGACATCGAGCTCTACAGCCAGTACCTGGAGCGCCTGCGCCGCTTCATCAGCCAGGAACTGACCGCACAGTATGCCTGAAAATCCAGCAGTTCAAAGCTCAGTCCAAGTGAAACGAACACTCCAGTGTCAATTTGAGGGCCTGCTTCAACGTTTTCTACTCTGTAGGCTGGTAAATATTAACCTGTAGACCTGGATGGTTCAACATCTTGAAGCAGGACCTTGTGGGTCCAGTATAGCAGGGCAAAAATCACCACAAACTGTATTGTCATTATTTCTtcgtattattgtattattatattattatttcttttgctCAAGGCATCTACAGAGAGACTGCCATAAGTGCAATTTCTTAGATTAGTTCTTGTTTGGTTCAATATTTTGGGCTGGAGGATTTAATTTTCTGCTCCTTCCTGTATGTATGTGCTCTCTGCTGGACAGATTGGGTGTTTTGTCTGACCTTGTGGAGACCATTATATGGGTCAAGTGTGTATGTACTGATTTATTACAGACTCTTTCAAAAGCTTTTGGATCTCAAGCACTTCTTTTGCCCCctgttcagttttgtttgtcACTTCTTAATGCATTTGGATTGCCAGCCAGCCAGCATCTTGTGTGTGGACATGAACTGAGCGATAAATTTAGGCAGCAAGCAATATAACTTGGGTTACTGTGAATACAACACTAAGGCAACcttgatacaaaaaaaaaaaaaatagttccaTTTCCCCCATTTCCCCTCCCATGGAACAACTGAACTGAAAAGAATGACGTCCGTTTTCCTTTAACGCAGTTAAATTCACATGAATGTAGCTTTCATCTTTCATTCTCCACAATGATGCGTAGATTATGAGTAACTAGTGGTTTGTGTTATCTTTCCATCTGAGCTTCTCCGTCAGTGTGCTTTCCTCTGACTCTCATTCATGTCTTTCCTGAACTCTTTAAATCTTGTATATATTTCCCTAAATGCTCTGTCTCACACGTtcacactctgtctcactgtgaCACTATACGCATTAACTATTCATACATCATCTCAGTGCCTCACCTTTTAATTCACAAGTTTTCTTGTGAATTAAGAATGGGTACTTCTGTTCTCTCTTCCGAACTCTCCGACGTTGTTACACCCTTTCCTCTTTCTCATAGCGGCAGTGTCTGTAAAGCTTAAGAGATGGTGAGAGATTTTGAATATAAACgcataaaacaaaaacacattgcTAATTTGTAAGATATCCTTCCTCTTTTTGGTATTTCTTATTgcagacagttttttttagtATTCTATTTATGACATTAACATTTCTCGCAGTTTAGCTATACTTAACGCATTTTAAGAACATTACGAAGAACTTGCAAATCTATTTTTCTAAGAGTAAGTTTTTGCTCTAGTGCTCTAGTTTTATCTAAATCAGAGCCATTCTTAAGGGACTGGACAATAGTTTTATTGCTATTTGGTTGAAGTGGAAAGAGGATAATTCAGCCCTATCCCTAAGATAATTAGATTTGCCTTTGTCATCAATCTAAAGCCGCTTTTGAACATGACTGCCTGAATGGCGAGATCTTCTAATTTCACAAACTCAATTTAAATTTCCAAAGTAAAATACCATGGGTTTTTGTCTCAAAACGCAATAACATCAAAATTACATGTATTATAGGTGTAAGCTGCAGTCTCACAGTGTGTGTACTCACACCCTCTACACTCCAAATGGCAATAAACCTAAACTTCATGATGCAGATGTttggaaaaaacattttagaaaccctcatatttaaaatgattaatgtattattctttttttttttttttttttttttttccccagctgcAGCCATGTATAAATGTGTAGTCATGTTTCCGTTGGTGAAAGAAGCAACtgaacttttttccttttgtgtaTCCTTTTCTTAGCTGAAGAATGTATGTGCTGTAATGTAACTGATTAATAAAAGTGATGATGACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378034 lncRNA upstream 200047 12805522 ~ 12805732 (+) True G319198
TU378003 lncRNA upstream 202760 12765055 ~ 12803019 (+) True G319170
TU377999 lncRNA upstream 214440 12775439 ~ 12791339 (+) False G319170
TU378001 lncRNA upstream 226546 12773098 ~ 12779233 (+) False G319170
XR_004580306.1 lncRNA upstream 242052 12761836 ~ 12763727 (+) False LOC117599962
TU378126 lncRNA downstream 7773 13022327 ~ 13023135 (+) True G319276
TU378137 lncRNA downstream 22468 13037022 ~ 13037736 (+) True G319286
TU378165 lncRNA downstream 72709 13087263 ~ 13087475 (+) True G319314
TU378169 lncRNA downstream 87793 13102347 ~ 13102608 (+) True G319318
TU378181 lncRNA downstream 125720 13140274 ~ 13140482 (+) True G319330
XM_026924981.2 mRNA upstream 22930 12968314 ~ 12982849 (+) True LOC113533117
XM_034314599.1 mRNA upstream 208955 12782537 ~ 12796824 (+) False LOC113533470
XM_034314598.1 mRNA upstream 208955 12792135 ~ 12796824 (+) True LOC113533470
XM_034297705.1 mRNA upstream 577248 12416510 ~ 12428531 (+) True LOC113533522
XM_026925817.2 mRNA upstream 1382934 11596700 ~ 11622845 (+) False pax3a
XM_034297752.1 mRNA downstream 6588 13021142 ~ 13154527 (+) True sema6ba
XM_026925054.2 mRNA downstream 6588 13021142 ~ 13154526 (+) False sema6ba
XM_034297753.1 mRNA downstream 49941 13064495 ~ 13154527 (+) False sema6ba
XM_034297749.1 mRNA downstream 70926 13085480 ~ 13154527 (+) False sema6ba
XM_034297750.1 mRNA downstream 71050 13085604 ~ 13154527 (+) False sema6ba
TU378000 other upstream 232912 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1432882 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1456591 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1457600 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1536280 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 822879 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 822879 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1812711 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2854462 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2915398 15929952 ~ 15936768 (+) False gpx4b

Expression Profile