Item | Value |
---|---|
RNA id | TCONS_00008048 |
length | 361 |
RNA type | processed_transcript |
GC content | 0.42 |
exon number | 2 |
gene id | XLOC_004201 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007122.7 |
NCBI id | CM002895.2 |
chromosome length | 45484837 |
location | 30106182 ~ 30158609 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0042393 | histone binding | molecular_function |
GO:0003682 | chromatin binding | molecular_function |
id | description |
---|---|
ko03036 | Chromosome and associated proteins |
id | description |
---|---|
ZDB-GENE-130530-546 | Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SCML2 (Scm polycomb group protein like 2). |
ensembl_id | ENSDART00000156196 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00008040 | lncRNA | downstream | 191917 | 29961114 ~ 29961901 (-) | True | XLOC_004198 |
TCONS_00008036 | lncRNA | downstream | 232816 | 29918315 ~ 29921002 (-) | False | XLOC_004197 |
TCONS_00008027 | lncRNA | downstream | 391807 | 29760108 ~ 29762011 (-) | True | XLOC_004194 |
TCONS_00008025 | lncRNA | downstream | 416571 | 29734578 ~ 29737247 (-) | True | XLOC_004193 |
TCONS_00008023 | lncRNA | downstream | 495948 | 29652690 ~ 29657870 (-) | True | XLOC_004191 |
TCONS_00008053 | lncRNA | upstream | 205793 | 30361628 ~ 30364805 (-) | True | XLOC_004204 |
TCONS_00008812 | lncRNA | upstream | 1044384 | 31200219 ~ 31202839 (-) | True | XLOC_004211 |
TCONS_00008813 | lncRNA | upstream | 1049090 | 31204925 ~ 31211308 (-) | True | XLOC_004212 |
TCONS_00008814 | lncRNA | upstream | 1994383 | 32150218 ~ 32157526 (-) | False | XLOC_004216 |
TCONS_00008815 | lncRNA | upstream | 1999119 | 32154954 ~ 32156318 (-) | True | XLOC_004216 |
TCONS_00008044 | mRNA | downstream | 15519 | 30106182 ~ 30138299 (-) | False | XLOC_004201 |
TCONS_00008041 | mRNA | downstream | 157461 | 29981678 ~ 29996357 (-) | False | XLOC_004199 |
TCONS_00008042 | mRNA | downstream | 157474 | 29981680 ~ 29996344 (-) | True | XLOC_004199 |
TCONS_00008038 | mRNA | downstream | 206891 | 29936748 ~ 29946927 (-) | False | XLOC_004197 |
TCONS_00008037 | mRNA | downstream | 207178 | 29936743 ~ 29946640 (-) | False | XLOC_004197 |
TCONS_00008049 | mRNA | upstream | 177124 | 30332959 ~ 30341431 (-) | True | XLOC_004202 |
TCONS_00008050 | mRNA | upstream | 192438 | 30348273 ~ 30352333 (-) | True | XLOC_004203 |
TCONS_00008051 | mRNA | upstream | 199607 | 30355442 ~ 30364847 (-) | False | XLOC_004204 |
TCONS_00008054 | mRNA | upstream | 209833 | 30365668 ~ 30508843 (-) | False | XLOC_004205 |
TCONS_00008055 | mRNA | upstream | 211803 | 30367638 ~ 30508851 (-) | False | XLOC_004205 |
TCONS_00008043 | other | downstream | 52561 | 30101142 ~ 30101257 (-) | True | XLOC_004200 |
TCONS_00008039 | other | downstream | 207178 | 29944930 ~ 29946640 (-) | True | XLOC_004197 |
TCONS_00008033 | other | downstream | 244193 | 29896372 ~ 29909625 (-) | False | XLOC_004196 |
TCONS_00008030 | other | downstream | 337616 | 29809697 ~ 29816202 (-) | False | XLOC_004195 |
TCONS_00008022 | other | downstream | 495966 | 29652690 ~ 29657852 (-) | False | XLOC_004191 |
TCONS_00008052 | other | upstream | 202274 | 30358109 ~ 30364824 (-) | False | XLOC_004204 |
TCONS_00008056 | other | upstream | 268391 | 30424226 ~ 30508791 (-) | True | XLOC_004205 |
TCONS_00008067 | other | upstream | 1014514 | 31170349 ~ 31172254 (-) | True | XLOC_004210 |
TCONS_00008075 | other | upstream | 2575330 | 32731165 ~ 32737593 (-) | True | XLOC_004221 |
TCONS_00008078 | other | upstream | 3215416 | 33371251 ~ 33371367 (-) | True | XLOC_004227 |