RNA id: XM_026925863.2


Basic Information

Item Value
RNA id XM_026925863.2
length 2328
RNA type mRNA
GC content 0.46
exon number 13
gene id acsm3
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10861959 ~ 10878656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAACCCCCTCAGAACAACAGGTAAGACTTAATATCGCGAGAAAGTTTATTACAAGGAAGTGAGCTCCCCGCTGACATGTTTCCGTACAGACGGAGTAGTTCGGTGCTGTTGTAAAGACTTTGTGATGAATTGAGAAGGCAGTGGAGGAGAGGGAGACCACGCCCTCCTGGTGCTGCTTCTCTCCCAGCTGTTAGTGTTTATAAAGCCCGTGTGAACATTAGCGTCAGAAACAATGCTCCTGCTCGCTGTTCGTTGGCGTGGATTATTAACTCATGTGTTAAAGCCGGAGAGAAGAACACAAtggctccacacacacacatccaaaacAACAAGCCCGAAAAACTTCACCGACTACAGCAGTCTGATGCGCTTACCCAAACCCGCCATTCCTCCTCTCTTCAACTTCGCTAAACATGTGCTGGACGTGTGGGAATCCACAGAAAAGGCAGGTGCTAAGTCATCTTGGCCTGCTCTGTGGTGGGTTAATGATAGAGATGAAGAGATCAGATGGAGTTTTGAGGAGCTGGGCTTCTACTCTAGACAACTAGCTAATGTTTTGATTGATGAATGCCGTTTGGTAAGAGGAGATCGAGTCCTTCTCATCCTGCCAAGAGTTCCAGAGTGGTGGCTGGTCAATATTGCCTGCCTCAGAACAGGTACAGTTCTGATCCCTGGAACATCCCAGCTTACAGCCAGAGACGTCCTGCATCGTTTGCAGGTCTCCCAAGCAAAGTGTCTGATCACAGATGAGAGTATGGCACCACTGATGGAGGCTGTGATTCCACAATGTCCCGCACTGACCTCTAAGCTTCTGCTTTCCAACAAAGAGCGACCAGGATGGGGCAACCTTGCAGCAGTAATGGGGAGTGCTTCTGCTGAACACGTGTGCGTGGACACGAGGAGTGACGAACCTATGACCATCTTCTTCACCAGTGGAACCACTGGGTCTCCCAAAATGACAGTTCACAGCCACTGTAGCTATGGCCTAGGGCTCACCTTCAATGgcagGTACTGGTTAGATCTTACTGATGGTGATGTGTTTTGGAACACCTCAGATACAGGCTGGGCTAAATCTGCATGGAGCAGTGTATTTGCTCCCTGGACTCAGGGAGCGTGTGTGTTCGTACACCATATGCCACGCTTCGACACCAGCACTGTCCTCAAGACTCTCTGCAGGTATCCCATCAGCACTTTCTGCAGTGCTCCAACAGCTTATCGGATGTTAGTACAGGAGGATCCATCCAGgttcCAGTTTCAGGCTCTGGAGCACTGCCTGTGTGCAGGAGAGCCCCTTAACCCTGAGGTGATGAGTAAATGGAAGGAGCTCACAGGCCTTGATATCTACGAGGGATATGGGCAGACTGAGACTGTTTTGATTGCTGGCACATTCAAAGGTATGGAAATTAGACCCGGTTCTTTTGGGAAAGCATCACCAGCTTATGATGTGCAGGTTATAAATGAAGAAGGAAATATTGTTGCTCGGGGAACAGAAGGAAATCTGGCTATCAGAGTGAAACCAGATagacctttctctctcttcacagaGTACATGGGAGAGCCAGAGAAAACAGCAGAATGTTTCCGTGGCGATTTCTACCTCACAGGTGACAGAGGGATAATGGACCAGGACGGATATCTGTGGTTCGTTGGCagagctgatgatgtcatactGTCTGCAGGATATCGTATTGGCCCATTTGAGGTGGAGAATGCTTTAATAGAACATGAGGCTGTGGCTGAGTCAGCTGTGGTCAGCAGTCCTGACCCAGTCAGAGGAGAGGTAGTGAAGGCATTTGTTGTGCTTACTTCAGAATATAAACACAGAGACCAAAATGAGCTAATCAGACAACTGCAGACACATGTGAAGAAGGTCACAGCTCCATATAAATACCCCCGCAAGATTGAGTTTGTGGACCAGCTTCCCAAGACAGTGAGTGGTAAAATCCGGAGAGTGGAACTGAGGAAGAAGGAATGGGGACTGCCATGACTACCATACGCTACTGCTGTGATTGGATACCAGTGATGACTCaacatcattttaaacataCTGTTACACATACTGTCATTTATTATAGGGCCATAATGAACATAAATAAGTTAGAATTCCACTTTAGATGATGTAGTGATCTAAGAATTAAGGTCAATTGTCATCTGGCCTGGTATCAACCTGGTATCTGAATTTCCTCACAAGGTATTTCAAGCATAAGGACAACTTATAAATTCAGTCAGgtatgaatattttaatcaaagtcAGTTTTTATCTGATTAAATAAGGTAGGTGTGCTTATACACTccaataaagaaatatttcagcattttcaaCCTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01896 ACSM; medium-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403440.2 lncRNA upstream 14173 10847468 ~ 10847786 (+) True LOC113533661
XR_003403443.2 lncRNA upstream 15947 10845716 ~ 10846012 (+) True LOC113533665
XR_004576927.1 lncRNA upstream 19933 10841673 ~ 10842026 (+) True LOC117595750
TU376631 lncRNA upstream 127876 10730411 ~ 10734083 (+) False camk2n1a
TU376904 lncRNA downstream 81265 10959921 ~ 10962370 (+) True G318248
TU376903 lncRNA downstream 105571 10984227 ~ 10987576 (+) False G318248
TU376936 lncRNA downstream 129292 11007948 ~ 11009146 (+) True G318273
TU377003 lncRNA downstream 228139 11106795 ~ 11169139 (+) True G318331
TU377005 lncRNA downstream 234297 11112953 ~ 11119827 (+) True G318332
XM_026925735.2 mRNA upstream 1663 10838755 ~ 10860296 (+) True ncapd2
XM_034314779.1 mRNA upstream 127871 10730346 ~ 10734088 (+) True camk2n1a
XM_026925809.2 mRNA upstream 142810 10713007 ~ 10719149 (+) False mul1a
XM_026925891.2 mRNA downstream 1585 10880241 ~ 10897751 (+) True map6d1
XM_026925676.2 mRNA downstream 309142 11187798 ~ 11221863 (+) True LOC113533503
XM_026925046.2 mRNA downstream 359583 11238239 ~ 11253682 (+) True ap1s3b
XM_026925045.2 mRNA downstream 359588 11238244 ~ 11253682 (+) False ap1s3b
XM_034314685.1 mRNA downstream 429365 11308021 ~ 11315878 (+) True LOC113533219
TU376560 other upstream 293063 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 298965 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 299345 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 674135 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 884058 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 521228 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 588643 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 669452 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 670459 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 694171 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile