RNA id: XM_026925873.2


Basic Information

Item Value
RNA id XM_026925873.2
length 5692
RNA type mRNA
GC content 0.44
exon number 10
gene id rorcb
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13185931 ~ 13216057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agggagagagagggagggaaagtgagacacacacacacacacacacacacactcactgctcaCTATCAGCCGCAGCTCTGAGCACGCATAAACGTGTAATCAACGTGGTCTGCTCACTTACTTTTATTCCAAGCACCATACAGACGTGTAACAAAGTGGACCGCTTTTAACGCGTTTGATTtgctctgattttttttgtttgattccTGATGATGAGCTCCATCGGAGCTGAAATATTATCCCGGGTTAGCTTAATAAGCTTACTTAAGCTAACTACGTAGCTCTTCACGTACTTGTTTCCTTTTCAGCATCTTGTGGACTtccaaaacctgaaaaaaactcaaaaatgaGAGCTCAAATAGAGGTGATTCCGTGTAAGATCTGTGGTGATAAGTCCTCTGGGATCCATTATGGTGTCATCACCTGTGAAGGCTGCAAGGGATTTTTTCGACGCAGCCAGCAGAACAATGCTATGTACTCATGCTCTCGGCAGAGGAACTGCTTGATCGACCGTACTAACCGCAACCGCTGCCAGCACTGTCGTCTCCAAAAGTGCTTGGCACTAGGCATGAGCCGAGATGCGGTGAAGTTTGGCCGCATGTCTAAAAAGCAGCGTGACAGCCTGTACGCAGAGGTGCAGCGGCACCAGCAGCTGGCGCGGGAGCCTGAGGAGGCGGGCGAGGACAGCGGACACAGCCGCTCGTACAGCAGCACAGGCTCCAACACCACCCTCAGTGATCTAGACGACATCACCACATTGCCCGACGGTCTGCTCTTTGACCTGCCGCTCACACCAGGGGAGGCAGCTGAATACTGTGCCCTCGAGCTGCTTGAGGGCGGGGCTAGTAGTGGAACAGGGAGTGCAGTGAGCAGCAGCTCATCCAATCAGAGCTCTCCAGAGCCTAGCATGCTGGATATAGTGGAAGCAGGCCGGGTGAAGCACGAGTACCAGCTGCTCCCTGAGCCCAGCCTGCTCACGCACACCCTGCTGGGGGCGCTATCAGATGACTGCTCTCTGCTTGATATAGAGCGGATCACTCAGAATGTGGTGAAGTCACATTTAGAGACGTGTCAGTACAGCACAGAGGAGCTGAAAAGACTCACTTGGAACGTATATACTCCCGAGGAGACCCGCTCCTTCCAGCTCAAGTCTGCTGAGTGGATGTGGCAGCAGTGTGCCGTGCACATCACCAACGCCATCCAGTACGTGGTGGAGTTCGCCAAGCGTGTCAGCGGCTTCATGGACCTCTGCCAGAATGACCAGATTATCCTCCTTAAAGCAGGCTGCTTAGAGGTTCTGTTGATCCGCATGTGCCGTGCGTACAACTCCACCAACAACACAATGCTTTTCGACGGCAAGTTTGCCAGCCCTCAGCTCTTTAAAGCACTAGgctgtgATGACCTGGTGAATGCCATCTTTGAGTTGGCCAAGGGTCTGTGTCGCCTGCAGCTGAGCGAGGAAGAGATGGCCCTATTCAGTGCCGCCATCTTGCTATCACCTGatcgCCCGTGGTTAACAGAGAGTCAGCAGGTGCAAAAGCTGCAGGAGAAGGTTTATTTGGCCCTGCAGCACAGCCTGCACATGGGGGGAGGCGGTCAAGAGAAACTGGACAAGATGGCGTCCAAGCTGCCGCAGATGAAGTCGATCTGTAACCTCCACATCGACAAGCTGGAGTTTTTCCGGCTGGTTCACCCTGAAACGGCCTACAGCTTCCCTCCTCTCTACAGGGAAGTGTTTGGCAGTGAGATCAACTTCCCTGACTCCACTGACAGTTAGAGGCGAGGACAGAGAGGTTGGGGGGAAGGGGGGTGGGAGGGTGTTGATGTggcagaagaggaagagaaccAGATTCTCTGTTGCAGAGAGAGGATGTGTGAAAGATAGGATGTCAAAAATGGAGGAATATAAAGAATAGTGGAGGCCTGAGGTGTGAAAACTTTTTAGCGTAAAAAAAGAAATCGAAACCTGTAAAAACCTCTTAGCAGCCCAGACAATCTGGTGTTTTTAGTTACGCTTGTGTACAAAGAGCACCACCAATTAGTACAGGGGCCAACACAGGGTACTCCTCTCTACACACACGACTAACACATCacatattccttttttaaaaaaaaaagaccaccaGTATGACACATGAAAGCACTTTCGTCTTATTTAGGAATATTTATTAAGGCAGAGGTTCATAATCCTGTCCTCAGGGATCCTCTGCCGGTACAGATGTTTGTTCTGGTCCTTTTCTCAATGCACTTCTACCAGAAAATTTTGATCACCCAGCTCAGGTGCGATAACATCTGACATAAAACTACCTTAATAAAGTACCCTTCCCCTTTACACTTAACTCTGTGGACTAATTATGAATGTAtgtccctataacagcacttacTATGCGACCGAATGTACATACTGCACTTTGGTTCGCGAAAATGCTTTACGAAACCCATGTCGGTTACACGTGACAATCAAGAATCTTCTGGAAACCAGTCAGTGCCCAAAAGGACCAACCTCCACGATCAACACATTAATGTGCtagtagggctgggcgatatgatgatGTTGATATGATACCGATATCGGTATCATGATGAattgtcacaatacacttttctgaaatatcaCGGGTATCATCAGTGAAACACTACCTAAATTTATTACTGTACAAAACGTTTTATTTTTTTCGTGTtaaattgtatgtttttgtaGTCATAAAATCAAAGTGCAACTCGTATGACTTCAAGGGTTCAATACTGTTATGCTAgcattaggggtgtaatgatatgGTGCATCGTAGATTGCGATACAAGGCTCtcaatttgatttgtttgtgtatccAAATTTTGTAGACTATTCGTCATAAAATACCACTTATATCACATGACAGATGTTACGTCTGAAGAAATAACTTCCTATTTATCTCAAATCAGGAGAGGCTTACAAAAAACATGTTTGTCCTAAGCAAATGTTTTTCACGCACTAATACGCTAGTATACTAGCCAGAGAAATCCGTTCAGGCAGCTATAAATCTACGATTCATCCCAAGCTAAAGAAATCTCCATGGTAATTGGGAAGTTCGTATTCGGTAGTGGAGAACGCAGGATTCAGAAACACATCTAGGGCTACAGAGAGCTGCGTGACTCTGAAGGGAGAGCTAGCTAACAGCAGAATAGGACACGCCCCCTTGTGAGTCAAACCAGTGGAAGCTAGCTACGTTTCATTTTGGTTACATTCGAATCcacagctttttgtttttgttatatgcTGCTACGAGTCTGAATGAATCACACAAATACTGTCATTATTACATTTCAATTACTGTACTTCTACAACgctgaatgttttaatcaactgaaaatgaaaacctAAGGCATGTATGCACACCATGCTCGTTTTTGCTGTATTGAAAATGTATCGCATCGTGACACCACCGTATTGTATCATATAAAGTTTGAATTATGTGTTTCATTACACCCCTGGCTAGCCCTTCTAAATATCATGCTATCTTTTGTCTTCAATATGACGTAGTTGCCAAATCGCCCAACCCTACAAGCTGGCATAGTTTATAGTGTGCAATAAAAATGTGTCACAAGGTAGTACGTCAGGCAAAGTAGTAAGGCTTGTACAAGCTCACACTTCCTCAGGCATGAGTGTTCAGACAGTATTCGGTGCTGCTCTTAAGttacttttgattttattatttaaaatgcaatgaGAAACCTCAGTCCCAGTGTATCTGTCCTTGTAAATGCAACTTGAAGAAAGTGTAAAAATTGTGTTCCTTTTAATTTATGCATTCATTTATAGATATTTTGCTTAAGGATGCATATAAATAGATACACATGTGTATAtgaacagagagacacagagagacacagagagacacggAGAGGGGAGTAGAAGACATAGCAGGAGTAAAAGGAATAGAGAATAGAGGAATAGAGGAAGAGCGGGGCCTGGACATGGGAATTCCTGTTTGGCCAGGATCAATGAACTGGAGAAAGGAACTAGACGGTGCAAACAAGGAGCTTTCTCTTTGAAAAACGCTACAGCTGTAATCGGATATTCCACTTTCCTGAGTATTTTGGGCACCACTTGTTGTGAACTGCTCTGTAATATTCGACAGAATGGACGCTCATTGTGAGCCCACATGATGACACTCCAGAATATGCATATTTTTGGCCCAATGGCGAAGAAGGACATGTTCAGGGACGTGCAGGACATTCAAGCACCCTTTCTCATGGCTGATAGTCTAACAAGCATCTGAATGACTGACATGCTGTTTGGACTGTTGTGAGAGCAGATGCATGGACTACCATTGGTGAAAAGATGACTGTCATTatgtgacacacacatatgcacacacatacagggtCAGGCTGAAGTCAGGACATGTTCAGGTTTGTTCgctgtattattttgtaaattgtgGCTATCTTTTACCTGTTTCAGTgtcccacttcctgtttctccaCACCTCTCTTCCtactcacacacttcagcatGCTGAAAGGAAACTTAGCATTCCCCTGAGTAAGGGCTTAGTGTAGTCTTTACCATCGAACACTCTGATACACTCTGATAATTCTCGGATACTACTCAGATGTTTTTCCAATATTGTTATGTTCAAACTTCTTGAAAATCCAGTGTAATCTGCAAGCACCCCTCGCTGCGGAACCATAAGTCCAGGTGGATAAGGCTGGATACGTGTGTTTGTTGTTCTATTCTGTACAGCAtcttaggggttagggttaatcTTAcaggaggagttggatcaggtccagctccacccctagacttttggttctgcaacGAGGACTATCTCAAATTCTGAGCAGCCTGAAGCATTCAAGAAGTCTTTACCTACTGAGAAATGAATACGTCATTAGCACTAATCGGAGGGTTTGCACAGTATGGATGGCGTTAAGCTGCGTTGTGAATGATGTATAATTATTTTGGTTTTAGGTGCATGCTATGTCATCATTTTTGAACGTTCATGTACATCACAAGCAGACTAATCTCTCTGTGTGCTTAGTTTGTTCTGGTTATTGGttgtaagaggaaaaaaacctttttgtttTCCATACACTTGTTACAAAAATGagcattttatataaatcaCTCAGGGAGCTAGCTGGTCTCTGTTCTACCAGTCTCCTAGCTTTGCCAAccagacacaaaacacacacaccaacacacatacacatatgcacacatataAAGGCACCCCACTTTTTGCACCGAACAAGAGACCCGTATCCTCAATCACTGTGTCCTGTagctatatatattatacagtatatatttttgtgaatgtcAAGCACAAAGTGTCAAAGacctttcctctttcttctaATGTTAAACTATAAGATTTTTGAGTCTGAATTATATTAGGTATAGTCTATGAactagttaaaaaaataaagataaaaactgAATCGTATTCATTGAtgtatgttgtttttatgtgaGCTAGTCTGGTTGGACTGTAGctgttttgtccatttataatTGCGTGTCCACCAGACCTGTCCTGTTTGGTTTACCTGTCATGGTCTGTTTTAACACAATAGAAATGcctaaaaaatgtttttttcctttcacatcTGTTGgatattttataacaaaatgtTAGAATCTCATAACAGTTCATCTCATTGTTACaccatgtaaaaaaatgtgctttaagGAATGTAATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378125 lncRNA upstream 28202 13156524 ~ 13157729 (+) True G319275
TU378124 lncRNA upstream 31499 13153131 ~ 13154432 (+) False sema6ba
TU378185 lncRNA upstream 37069 13148652 ~ 13148862 (+) True G319334
TU378181 lncRNA upstream 45449 13140274 ~ 13140482 (+) True G319330
TU378169 lncRNA upstream 83323 13102347 ~ 13102608 (+) True G319318
TU378196 lncRNA downstream 23090 13239147 ~ 13306143 (+) True G319342
TU378255 lncRNA downstream 147768 13363825 ~ 13411607 (+) True G319382
XR_004580330.1 lncRNA downstream 202498 13418555 ~ 13421383 (+) True LOC117599983
TU378293 lncRNA downstream 289049 13505106 ~ 13510727 (+) True G319415
TU378685 lncRNA downstream 373542 13589599 ~ 13590316 (+) True G319755
XM_034297752.1 mRNA upstream 31404 13021142 ~ 13154527 (+) True sema6ba
XM_034297753.1 mRNA upstream 31404 13064495 ~ 13154527 (+) False sema6ba
XM_034297749.1 mRNA upstream 31404 13085480 ~ 13154527 (+) False sema6ba
XM_034297750.1 mRNA upstream 31404 13085604 ~ 13154527 (+) False sema6ba
XM_026925054.2 mRNA upstream 31405 13021142 ~ 13154526 (+) False sema6ba
XM_026925322.2 mRNA downstream 1433 13217490 ~ 13241937 (+) True sh3gl1a
XM_026925325.2 mRNA downstream 37553 13253610 ~ 13265447 (+) True stap2a
XM_026925327.2 mRNA downstream 37648 13253705 ~ 13265447 (+) False stap2a
XM_034314561.1 mRNA downstream 51697 13267754 ~ 13285252 (+) True sema4e
XM_026925890.2 mRNA downstream 83451 13299508 ~ 13305437 (+) False prkab2
TU378000 other upstream 413064 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1613034 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1636743 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1637752 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1716432 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 621376 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 621376 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1611208 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2652959 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2713895 15929952 ~ 15936768 (+) False gpx4b

Expression Profile