RNA id: XM_026925892.2


Basic Information

Item Value
RNA id XM_026925892.2
length 2227
RNA type mRNA
GC content 0.52
exon number 3
gene id klf2b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16227671 ~ 16230299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCaggcagagggagagagcgtgtgtgttttactcagagtaagtggagagagagagagcgccaCTCGACCTGCTCTTTTATACCGGCTATTTTTGGGCGCTCTACCTCCATCCTGAACGCCGTTTCCTCCGCTCGCACAATTGGTCCAGCAGCGGGGTTTATAAGGGAGGAGGGTTTTACCTGCCACACACTCGCTGCCCGCTCAGGACGCTGGAGCAGCACAGCTTTATGGGAAAGAAAACGAACTCTGGATCAGACGTgtattaacagttttttttgacGAGGAGAGCGGTGTATTTTACGCTCACACAaaaaagagggtttttttttaaagtgtaactTTGACGTTTTGGAAAATGGCTTTACCTGGGACCATTTTGCCTTCTATTTCTACATTCGCAGGACAGAAGGAGAAACTTTGGGAAAGTAGGTGGATTGGAGAAGTGGAGAAACCGCTGGCGTGCGCGGTACCGAGCGTGGATTCGTGCCGTGCCAGAAAGGACGACGAGGATCTGAGCGATTTCTTGGATCTGGAGTTTATTCTGGCCAACACGACCGGTCCTGAGAGCGTGGTGGGACCAGTGGACTATAATTCAACAGTGGAGCACTGCAGCATGTACCAGACAGGGAGCGCGTACGTGCCGCCTCCACCACCGTACTCCCACAGCCTAGTGGCGGAACTGTTGCACTCCGAAGCGGACAACACGTACGGCATGAgcacaaccaccaccaccaccaccagcagcagcaacagcatcgGGATTCAGGGCCGGTTCGTGGTGAACTCCGCGCCTTTCCCGAGGCAGGACTTCGTCGAGGGGATCAAAGTTGAGCCGTGCGCGGACGGCTACGGTCCcgtgctggggatggtgccacagAGCTGCCACCGGATCAAGCAGGAGGGCAACGTATCGTGCGCGATGCCCTTTGACCAGCCGAGGCTCGCCGTCTCTCCGCAAGCAGCGGGGAACATGACGCCGCCGCTCAGCCCGGACGACCAGGCGCGTTGTCACACGCAGATCTGCCGCACCACTTTCCCGCAGAACGGCTACTACGCAAGCCACGCGCCTCCtccgcagcagcagcagcagcaacaccaGCATCAGCAGGTGCCGCTGGCCTACGCGGGAGCGCGCGCATACGCAGGCATGTTCGATGACGGCCTCGGTATGGTGCAGCCCGGTGCGCCGCGCGCGCTCCTCACTCCGCCGTCCTCACCGCTCGACCTGCTCGAGTCCAAGCCGAAGCGCGGGCGACGCACCTGGCCGAGGAAGCGCGCGGCCACGCACACCTGCACGTTCGCTGGATGCGGCAAGACGTACACCAAGAGCTCGCACCTCAAGGCGCATCACCGAACTCACACCgGTGAGAAGCCGTACCACTGCAACTGGGAAGGCTGCGGCTGGAAGTTTGCCCGCTCCGACGAGCTCACACGTCACTTCCGCAAGCACACCGGTCACCGACCCTTCCAGTGCCACCTGTGCGAGCGCGCCTTCTCCCGCTCCGACCATCTGGCGCTGCACATGAAGAGGCACatgtgagagacacacacaagacaAACGGCAAAAAAGCCAAAGCCTTATTACTGCCTTATTTAAGTCCTTTGTACAAGACCAAAAGactgttttgttattattatttttttttttgggtcgaTAAAGATTTATATTGTTCTTTATACTTTTGTAACAATGTAGCTGGTACTACGTGGGATTTATAGAGCAGGCAGTTAAAGCGCTGCATAAGTGTTTTGGGGACAAACAGCAACCTGCAGGGCTGGtcctataatatataaaatctctatatctctatatatagCTCTGTTGAAACTGGAAACAATGTGTAAGTTTAACATGGTGCCTTTATAGTGATGAATTTAGCATGCATGCTGTGCTGCCAGGATTGTGCACAACGTGACATCCTGAAATCATGCGTGATGACAATGTTTTCCTCTTGAAACTGCCTCCAAATTGTTCTAAGGACCAGAACTGTGCGTTCACTCAAGTTTGATACATTCTCAGCCATTTGGTTTTCATGGAAGTAAGATATTTTCTAGATGTTGTATCATGAAGGTACAATAACCTGTTCAAGCCCCATTGTACACTAGCACATACACCAGGGCTAGACgctctgcattatttttttttttaaagaatgtgtaCATACGTTTTATATTGTaagtattgtatttattgtacatattaAACTAAATTTGAATATATTCCTGG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K17845 KLF2; krueppel-like factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380548 lncRNA downstream 4357 16187976 ~ 16223314 (-) True G321354
TU380547 lncRNA downstream 4357 16192352 ~ 16223314 (-) False G321354
TU380546 lncRNA downstream 37101 16187976 ~ 16190570 (-) False G321354
TU380540 lncRNA downstream 128433 16098868 ~ 16099238 (-) True G321349
TU380538 lncRNA downstream 178028 16049442 ~ 16049643 (-) True G321347
TU380672 lncRNA upstream 144211 16374510 ~ 16375343 (-) True G321465
TU380675 lncRNA upstream 163909 16394208 ~ 16456123 (-) True G321468
XR_004576910.1 lncRNA upstream 164454 16394753 ~ 16395539 (-) True LOC117595731
TU380677 lncRNA upstream 169001 16399300 ~ 16401527 (-) True G321470
TU380713 lncRNA upstream 288089 16518388 ~ 16520370 (-) True G321505
XM_034314554.1 mRNA downstream 67454 16147863 ~ 16160217 (-) False atcayb
XM_034314553.1 mRNA downstream 67455 16147863 ~ 16160216 (-) False atcayb
XM_026925048.2 mRNA downstream 67455 16147863 ~ 16160216 (-) True atcayb
XM_034314555.1 mRNA downstream 67455 16151316 ~ 16160216 (-) False atcayb
XM_034314556.1 mRNA downstream 67455 16152432 ~ 16160216 (-) False atcayb
XM_026925546.2 mRNA upstream 78259 16308558 ~ 16326957 (-) True ap1m1
XM_034297792.1 mRNA upstream 105704 16336003 ~ 16342837 (-) True LOC113533484
XM_026925803.2 mRNA upstream 155128 16385427 ~ 16392280 (-) True cib3
XM_026925539.2 mRNA upstream 239800 16470099 ~ 16473688 (-) False cirbpa
XM_026925538.2 mRNA upstream 239800 16470099 ~ 16473688 (-) True cirbpa
TU380217 other downstream 503315 15687258 ~ 15724356 (-) False LOC113533563
TU380215 other downstream 510176 15687258 ~ 15717495 (-) False LOC113533563
TU379938 other downstream 998415 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 1482184 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 4679232 11548368 ~ 11548439 (-) True trnaw-cca_17
TU380669 other upstream 127275 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 389334 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 743389 16973688 ~ 16973770 (-) False trnal-uaa_3
trnal-uaa_4 other upstream 850722 17081021 ~ 17081103 (-) True trnal-uaa_4
TU381420 other upstream 1269766 17500065 ~ 17500832 (-) True G322080

Expression Profile