RNA id: XM_026925900.2


Basic Information

Item Value
RNA id XM_026925900.2
length 2774
RNA type mRNA
GC content 0.49
exon number 18
gene id acss2l
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13909865 ~ 13931138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGCAGGGCAGTACCCAGCTGCCAATGCTTTTGAGAGTTAAAGGAACAAGACGtctgaagttatcaactgctTCCTGTTTTAGAGCCATCTGACAAACATGGTTGTTCCAGGGCTTCAAGACAAGGACGAGAAAGTATATTTTCCTCCAGAGGATCTGCAAATGGCTGCTCATGTGCCTGATTTTAACTCATATCTTGCCATGTACAAAAGGTCCACTGAGGAACCTGAAGAGTTCTGGAGGGAGGTTGCTCAGGAGTTTTACTGGAAGAAACCCCCCACAGGCCAAATGCTGCAGTATAACTTTGATATGACCAAGGGCCAGGTTTACATCAAGTTCATGGAAGGTGCCAAGACAAATATGTGCTACAACGTGCTAGACCGCAACGTGCTGGACCGGAACCTGGGCGAGAAGGTTGCATACTACTGGGAGGGGAACTCACCTGACCATCAGCTTACTATCACATACAGCCAGCTTCTAAAGCAGGTGTGCAGATGTGCCAATGCTCTCAAGCAGCTGGGTGTGAAGAAAGGAGACAGAGTGGCCATTTACTTGCCTATGATCCCCGAGCTTGTGTTCATCATGCTGGCCTGTGCTCGAATAGGGGCCGTGCATTCGATTGTGTTTGCAGGGTTTTCTTCCGAGTCTCTGGCTGAGAGGATCGTGGACGCTCAGTGTAGCATCTTGGTGACGGCAGATGGTGTTTACAGGGGAGAGAAGCTAATCAACCTGAAGCAGATCGCAGACCATGCCTTGGAGCACTGCAGAGAAAAAAGCTCCTTTACAGTCCAGAAATGTCTTGTAGTGAAGCATCATGCCTTCAGGACAACCAATACCTGCAATAAGCTACAGACACCGTGGAATGCAGAGTGTGATGTGTGGTGGGACGACGTTGTGAACAGTGCATCAGAGGAGTGTGAGCCTGAGTGGCTGGATGCTGAAGACCCGCTCTTCATCCTCTATACCAGCGGGTCCACGGGCAAACCCAAGGGTATACTGCACACTATTGCTGGCTACCTGCTCTACACATCTCTTACATTCAAATACGTCTTTGATTATCACCATGACGATGTGTACTGGTGCACAGCAGACATTGGCTGGATCACAGGCCACTCCTACATCACATATGGTCCATTAGCCAATGGGGCGACCAGTGTGCTGTTTGAAGGCATTCCAGTCTACCCTCACGTGGGCAGGATTTGGGAGATTATAGAGAAGCACAGAGTGTCTAAGTTTTACACAGCGCCCACTGCCATCAGGCTGCTTATGAAGTTCGGAAGCGAGCCACTGCAAAAATATGATCTGTCCAGTTTGCGTGTTCTGGGGACAGTGGGAGAGCCCATAAACCCGGAAGCCTGGCTCTGGTACCATGATGTCGTGGGTCAGGGTAGATGCCCCATAGTCGACACGTTCTGGCAAACTGAGACGGGAGGTCATGTTCTGACTCCACTGCCTGCAGCAACACCACTAAAGCCAGGATCTGCAACGTTACCGTTTTTCGGTGTGCAGCCCACAATCCTGAATGAGCACGGAGAGGAGCTGGAGGGAGAGGCCGAGGGCTACCTGGTTTTCCGGAAACCCTGGCCAGGCATCATGAGGGGCATTTATCAAAATCCAGAACGATTCCAGAGCACTTACTTCAAAAAGTTCCCAGGGTTTTATGTGACAGGAGATGGATGCAGGAGGGACAAAGAAGGCTACTACTGGATCACTGGCAGAATAGATGACATGCTCAATGTCTCAGGTCACTTGCTGAGCACAGCCGAGGTGGAGGCGGCGTTATCAGAACACCCGGCTGTGGCTGAAGCGGCCGTGGTCAGCTGTCCTCACACCGTGAAGGGCGAGTGTCTCTACTGCTTCATCACGCTTAAGGACAGCCAGGAATTCAACCACACTTTCAAGGAGGAACTCAAGAGGAAAGtgagagagaagatTGGTCCGATAGCCACTCCAGATTTCATCCAGAATGCCCCAGGCCTCCCCAAAACCCACTCAGGGAAGATCATGCGGCGTGTCCTGAGGCAGATCGCCCAAAATAAGAAGGACCTGGGTGACCTTTCCACTCTGGCTGACCCCAAAGTTGTGGAAGTGCTCTTCAGTCAGAGGTGTGAAGCAGCAGTGTGAGAGCTTCAAGCCACATCTCATGCCTTTCTGACCGGTCCTGGAAcagctttaataaaaataaaaaacaaaattcacacTGGCCTGTAGTGGGTTAGCTGATACTAAAGTAGAAGCAGAGAGACATTTCTTTCACCTTATTGGTGATGGAGTTTAGGTTTTTCTTCCAACCTCGATCTAAAAATTAGCACACAAGCAGGCACAACTTGATAGAATCACAGAAGTTTCGGAACTTACTGGCCGTGTGTTCCGTTATCTCAAGAAGGTACCCAAACAGAGATGTCCTGTAGATATCCTTGCCTTTCCAATGGCTCCAGAGCCTGACCCCCCCCCTCTGTTTTGGGTTGCCTATCAAAGAGCAACTTAGATTACTTATATTTATGTTGTCATGCCCCCATTTTGTATCACCAgccactgtacactgtaatgtAATCACAAACGGTCCAACCGCTAGAGAGACATAGAAACTAGCCATGATAGCCTGCAACAAAGAAACTAGACAAGTACATTTCAGTATGTCAGTATTGCAAATTGCACTTTCACAAAGgtacacaattattattataggtCTGGACTTTAGTATGCTTTAAACCCCTTCCCTTATACCTgcagttcctctctctctctctctctctctctctctctctctctc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01895 ACSS1_2, acs; acetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378866 lncRNA downstream 75067 13831855 ~ 13834798 (-) True G319906
TU378748 lncRNA downstream 229763 13679496 ~ 13680102 (-) False LOC113533556
TU378702 lncRNA downstream 280408 13629247 ~ 13629457 (-) True G319766
TU378700 lncRNA downstream 294122 13612520 ~ 13615743 (-) True ccl25a
TU378684 lncRNA downstream 322334 13587091 ~ 13587531 (-) True G319754
TU378946 lncRNA upstream 9473 13940611 ~ 13945349 (-) True G319974
TU378947 lncRNA upstream 17170 13948308 ~ 13949723 (-) True G319975
TU378970 lncRNA upstream 78771 14009909 ~ 14010188 (-) False G319995
TU378973 lncRNA upstream 78771 14009909 ~ 14010528 (-) True G319995
TU378979 lncRNA upstream 81064 14012202 ~ 14012408 (-) True G319999
XM_026925218.2 mRNA downstream 90404 13807775 ~ 13819461 (-) True napgb
XM_026925505.2 mRNA downstream 199168 13705300 ~ 13710697 (-) True LOC113533381
XM_026925918.2 mRNA downstream 206447 13693403 ~ 13703418 (-) False abhd8a
XM_026925666.2 mRNA upstream 211065 14142203 ~ 14336583 (-) True LOC113533496
XM_026925764.2 mRNA upstream 470791 14401929 ~ 14404823 (-) True rxfp3.2a
XM_026925763.2 mRNA upstream 477314 14408452 ~ 14429093 (-) True creb3l3b
XM_034314772.1 mRNA upstream 740134 14671272 ~ 14705998 (-) False plpp2a
XM_026925467.2 mRNA upstream 740134 14671272 ~ 14702715 (-) True plpp2a
trnaw-cca_17 other downstream 2361426 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 3381615 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4936653 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4955755 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 5024156 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 800774 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 1296334 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 1756120 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 1756120 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 2426436 16357574 ~ 16367004 (-) True G321462

Expression Profile