RNA id: XM_026940816.2


Basic Information

Item Value
RNA id XM_026940816.2
length 2014
RNA type mRNA
GC content 0.47
exon number 7
gene id toe1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2268447 ~ 2274946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGCGCTATATAGTGCAGAGAGACCGTGTTTTTACGCCCTAGGTAGGGCACTCTGAGGTCAAAGTGTGGTTTGGGATTTGAAAAACGACCAAACAAACGAAACTCACATGGAGAGAAAGTCAAGCGTGGAGGcggttattatttattttgtagagTAAAACCGTagctgttatttgttttttaaattctgaagAAGATTTAAGTGAAAAGAAGTATATAATTATAATCCTAAAATGTGTGTTTAGAAAAATGtagacacaacaaacacacacgcgtCAGGGGCTCGCAAGGAAAcagttatttatattaaatagtaAAGGTGCATTTGCTGAAATTAATCAGCTTTAATAAGAGACAGATGTCAGAGAAGTCACTATAGTGGCTGTGCtgcattatcatcattattattattattttaattaataagcaGTAAATGATGAGCTCCTCACTGGTTGTTCCTGTTATAGATGTTCAGAGtaataactttaaagaattaTGGCCTGCTATAGTGCTCGCCTTTAAAACCTCCTCATTCATCGCCCTGGACACGGAGCTCAGTGGTCTTGGAGCGAGGAAAGCTCTTCTAGCAGAGTCGATTGAGGATCGTTATAAAGCGATATGCCACGCTGCCCGGACTCGCTCTATTCTGTCCCTGGGACTTGCCTGTTACAAGAAACTGGAAGGCAAAGCGGACAGTACGTACCTGGTTCAGGTGTACAACCTGACGCTGCTGTGTGCGGAGGAGTACGTCATCGAGCCGCAGTCAGTGCAGTTCCTCGTTCAGCACGGCTTCGACTTCAACAAGCAGTACGCTCAGGGCGTCCCCTACGACAAGGGCAACGATAAGggtggAGAACCTCAGGGTGTGAACATGCGTACGTTGTTCGTGGAGCTCCTGAGAGCCAACAAGCCTCTGGTGCTCCATAACGGCCTGATCGACATGATCTTCCTGTACCAGTGCTTCTACGCTCACCTGCCCGAGAAACTGGGGACCTTCACCGCCGATCTGTCGCAGATGTTCCCCGCCGGCATTTACGACACCAAATACGCCACCGAGTACGAACTACGCTTCACAGCGTCTTACCTGGAGTACGCATATAAGAAGTGTAAGCTGGACAACAGCAGATCCATCAAGACCGCTCAGGACAGACCTCATGTGTTTCTGGAGTTTTGTAATTATACTGGCCGTCTGCAGAGCTACGTGGACTACAGGCCTTGCATCGACAGCCACAGCAGTGATGGACCTCTGAACATCTGCATTCAGTTCTCGGCTTACGGATGGTGCCCCAGTGGCTCTCGCTGCCccatgtcacatgacacagACCTCATAATCCGGCAGGACGAGAAAAGCAAAGAGGACAAGCGGAAAAAAAGGAAGcgcaggaagaagaagaaggctgcaaaggaggaggaagaagaggaggaagacgGGCCGCCGCAGGATAAGAAGGCTCACGTGGAGGATATGGATGAAGATggtgaagagaaagaggaacagaAGGAAGATGAAAAAGTTCATGGGAAATTCGCAGCTCATGACGAAGAGATGCCAAGCAGTGAAACCCCAGCCGCAGAGTCTCACAGTGATCCTGACAAGAACGAAAGTGATGCTCCTCAAACACATGATCTGACACCTGACGCAACAAACAAAAGTCCTAAAGCCAATGAGAGGAAGGTGGAAGGAGGCACGCACCGAGCCGGCTTTGACGCCTTCATGACCGGATACATTTTCGCCTTTGCGAGCATCCGGAATGCTGAAGGATCAGACTCCTGGATTCCTGCGTGCGCCAACAAGCTGTATCTGAGCGGCAAGAGCGTGCCGCTTCACATAGCCAAAAGCACCTTCTCAAAGTCCTCCAGAGCTCACATGACGAAAATGGAGCACGTCTGGAGAAAACAGTTTCCCAAAGCAGACGGGAATGCCTGAAggaatttttttgcttttgtggtAAATATGATTTAATCAAGTCACCTCTAATGGTGTAATAAAGCATTctgattttatataaaaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K13202 TOE1; target of EGR1 protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 145013 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 291732 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 373500 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 627721 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 631724 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 399487 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 456269 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 460173 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 514296 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 667541 2942487 ~ 2945207 (+) True LOC113543325
XM_026941061.2 mRNA upstream 92082 2169048 ~ 2176365 (+) True urod
XM_026941059.2 mRNA upstream 100234 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA upstream 100234 2147275 ~ 2168213 (+) False lyn
XM_026941306.2 mRNA upstream 123210 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA upstream 123210 2133213 ~ 2145237 (+) True tgs1
XM_026941102.2 mRNA downstream 23180 2298126 ~ 2318867 (+) False tmx3a
XM_034314711.1 mRNA downstream 23192 2298138 ~ 2318867 (+) False tmx3a
XM_026941100.2 mRNA downstream 30823 2305769 ~ 2318867 (+) True tmx3a
XM_026941358.2 mRNA downstream 44928 2319874 ~ 2325480 (+) True dsela
XM_034297694.1 mRNA downstream 370585 2645531 ~ 2655148 (+) True si:dkey-181m9.8
TU370902 other upstream 82770 2181979 ~ 2185677 (+) True G313112
XR_003404395.2 other upstream 125134 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 291138 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1132427 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1136764 1128925 ~ 1131683 (+) False paxip1
trnae-cuc_41 other downstream 219286 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 380254 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 380254 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 380254 2655200 ~ 2661421 (+) False LOC117599997
XR_004580353.1 other downstream 380254 2655200 ~ 2660562 (+) False LOC117599997

Expression Profile