RNA id: XM_026940823.2


Basic Information

Item Value
RNA id XM_026940823.2
length 2038
RNA type mRNA
GC content 0.42
exon number 10
gene id bmi1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2975646 ~ 2985302 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaggacTGGTGAGCGACTCTCGCGAAGCAGAGCAGGTGCGCGAGCCTCATGACGATGCACCGAACCACGCGGATAAAGATCACGGAGCTGAACCCGCATCTGATGTGCGTGTTATGCGGCGGCTACTTTATCGACGCCACTACCATCGTTGAGTGTCTTCATTCGTtctGTAAAATGTGCATCGTGCGGTATTTAGAGACCAGTAAATACTGTCCCATATGTGACGTACAAGTTCACAAAACCAAACCACTTCTCAATATCAGGTCGGATAAAACCCTTCAGGACATTGTGTACAAGCTGGTGCCTGGTCTGTTCAAAAATGAAATGAAACGAAGAAGAGATTTTTATGCAGCACATCCATCCGTTGATGCCGCTAAAGGATCGAATGAGGATCGGGGAGAAGTGGCTGACGAGGACAAGAGAATCATTGCTGATGATGAGATCATTAGTCTCTCGATTGAGTTTTTTGATCAGAACAGATTTGGAAGTGGTGATGGGGAAGACAAAGAACCCACAAAAGAGTCGAATGTAAAGCGATATTTGCAATGCCCGGCTGCTATGACAGTGATGCATCTCAGAAAATTTCTCCGAAGTAAAATGGATATTCCATGTAACTTCCAGATTGAGGTCATGTATGAAGACGAGCCTCTGAAGGATTATTACACATTAATGGACATTGCCTATATCTACACCTGGAGGCGGAATGGTCCACTGCCTCTGAAGTACAGGGTTCGTCCTGGCTGTAAGAAGCTAAAGCTAAGCAGTGCACCAAGCTGTGAGACAGCAGGTCAAAAACCTGAAACGGAAAGTGACTCGGGAAGCGAAAAGCTCAGCAGCCCAGTCCTTCATGCTCCTACACCTTCCACATCCTCCTCTCTGCCTAGCCAGAGCGCTCCGGTCAAATCCTCACACTCAAgcttctctcatctctcaccAGTCAACGGAGTGTCCAACAAAGCCGGCCCCAATGGCCAAGTCTCATTCAGCAACAAAGCCAGCAAGGGCTCAGTCAATGGCTCCAACTCTCTGGGGTGACAAAAGGACTAATGGACACGAAAAGCCATCAAACGAAGAGCTGCAAACTCGGATGCGAAGTTTGTAGGAACTTTAGTGAGGGACAGTGATCTTGTTGGATTTCGGGAGAAAAGCTACGACTGCTAACTCTGTCCCTTACGAGTTAGCACATGCAACTTTTTATGACTTTTTGCAATCGGGAGCTGTTTTCGAAAGGCAGTTTCTCTACCGAACCACCTTTTCCTTTTGTATTATGTATGTTTAAGTATGTATGTTAAGTATGACTTCTTATGTTTCTGTTAATTACTAAGATTTCATTGGTTGAATAAAGATCATGAAGTATATTTTGTGCATGAAGAACCCAGGATGAACGCCAGGAATCTTCTATTGTATAAACTCCAAATCATTCACGTAGGTTAGGGCATCAGTGTGtagaaattgatttttttttctttaaacaggaAGCAACCTTAAATGAGACATGCACAGTTGGTCATAAAGATGATTGATTGTTAGAAAAGCTACTAAGGGCTTTTAAGTTCTCCTCATATTTTAGTTAAGCGTTAAGCTCTGTACTTTtcaaaaagaaacataaaaaaatgaaggatCAACTAGCAACTTTTGGAAGTTCTTGCTGAAATGAATCGAAATTAGAGTTCCTTAGGAGCTGTTCATGCTTCTGAAAGATCTTCAGATGGTTCTGCTGGTGAGGAAACCTAAAGAAACTCGAAGATCTTTCAGGAATCATGATGAAGTACGACCTGTGAATAGTCGCTTCCTTTATTCTCACATCAGTGGACATTAGAAATGAccagattagatttatttctcATGCCTTAGcatatttcagtgtattttttgtCTAAGAGGACATTTCTCTTAATGTCTTTTGTGCTCCAGAAATGTCTAACTTTCTTGACAATTATTTTTGGCCGACACTTTCAGGCCTGTGTATCGTTTTCTGTTGTACAATATAAAACCTGTATCTGAATAAACATTTTACGTTTTTATTACTCAAA

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11459 PCGF4, BMI1; polycomb group RING finger protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404407.2 lncRNA upstream 30439 2942487 ~ 2945207 (+) True LOC113543325
TU371354 lncRNA upstream 186150 2789242 ~ 2789496 (+) True G313494
XR_004580285.1 lncRNA upstream 239058 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA upstream 240262 2735119 ~ 2735384 (+) True G313465
TU371292 lncRNA upstream 301000 2674433 ~ 2674646 (+) True G313443
TU371493 lncRNA downstream 90747 3076049 ~ 3076370 (+) True G313607
TU371707 lncRNA downstream 313796 3299098 ~ 3299306 (+) True G313796
TU371743 lncRNA downstream 495798 3481100 ~ 3489299 (+) False LOC113543208
TU371775 lncRNA downstream 539007 3524309 ~ 3524518 (+) True G313853
TU371896 lncRNA downstream 787768 3773070 ~ 3819909 (+) True G313949
XM_026940933.2 mRNA upstream 96931 2872529 ~ 2878715 (+) True klhl40a
XM_026941250.2 mRNA upstream 104390 2860285 ~ 2871256 (+) True hhatla
XM_026941205.2 mRNA upstream 140714 2808427 ~ 2834932 (+) True plcd1b
XM_026941204.2 mRNA upstream 140714 2817742 ~ 2834932 (+) False plcd1b
XM_026941137.2 mRNA upstream 247578 2718759 ~ 2728068 (+) True ralab
XM_026940953.2 mRNA downstream 29184 3014486 ~ 3019463 (+) True nebl
XM_026941475.2 mRNA downstream 94714 3080016 ~ 3082751 (+) True nrn1b
XM_026941397.2 mRNA downstream 313042 3298344 ~ 3317951 (+) True sall3a
XM_026941285.2 mRNA downstream 438265 3423567 ~ 3489367 (+) False LOC113543208
XM_026941286.2 mRNA downstream 441503 3426805 ~ 3489367 (+) True LOC113543208
trnat-agu_12 other upstream 86258 2889315 ~ 2889388 (+) True trnat-agu_12
TU371295 other upstream 299798 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 299798 2675322 ~ 2675848 (+) False G313445
XR_004580351.1 other upstream 313247 2655200 ~ 2662399 (+) False LOC117599997
trnas-aga_13 other downstream 640114 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 640658 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 642730 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 961633 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 1607138 4592440 ~ 4692816 (+) False LOC113543063

Expression Profile