Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034314541.1 |
| length | 921 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 5 |
| gene id | cnpy1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 1053868 ~ 1066467 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0040036 | regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580327.1 | lncRNA | upstream | 73817 | 976621 ~ 980051 (+) | True | LOC117599981 |
| TU370266 | lncRNA | upstream | 147422 | 906234 ~ 906446 (+) | True | G312540 |
| TU370257 | lncRNA | upstream | 167754 | 883404 ~ 886114 (+) | True | G312534 |
| TU370250 | lncRNA | upstream | 177988 | 875663 ~ 875880 (+) | True | G312531 |
| TU370220 | lncRNA | upstream | 187147 | 862387 ~ 866721 (+) | True | G312509 |
| XR_004580295.1 | lncRNA | downstream | 23391 | 1089858 ~ 1104324 (+) | True | LOC117599954 |
| XR_004580318.1 | lncRNA | downstream | 296909 | 1363376 ~ 1370691 (+) | True | LOC117599969 |
| TU370578 | lncRNA | downstream | 297769 | 1364236 ~ 1368869 (+) | False | LOC117599969 |
| TU370650 | lncRNA | downstream | 455834 | 1522301 ~ 1522511 (+) | True | G312877 |
| XR_004580341.1 | lncRNA | downstream | 558096 | 1624563 ~ 1662193 (+) | False | LOC113543035 |
| XM_026940965.2 | mRNA | upstream | 41676 | 1003909 ~ 1012192 (+) | True | shhb |
| XM_026941207.2 | mRNA | upstream | 88251 | 946792 ~ 965617 (+) | True | trpa1a |
| XM_026940929.2 | mRNA | upstream | 152244 | 898058 ~ 901624 (+) | True | tmem70 |
| XM_034314625.1 | mRNA | upstream | 152244 | 898218 ~ 901624 (+) | False | tmem70 |
| XM_026941381.2 | mRNA | upstream | 180102 | 868721 ~ 873766 (+) | True | rdh10b |
| XM_034314536.1 | mRNA | downstream | 62442 | 1128909 ~ 1147376 (+) | True | paxip1 |
| XM_026940999.2 | mRNA | downstream | 284796 | 1351263 ~ 1357482 (+) | True | cahz |
| XM_034314849.1 | mRNA | downstream | 821283 | 1887750 ~ 1935629 (+) | True | cdh6 |
| XM_026941232.2 | mRNA | downstream | 835834 | 1902301 ~ 1935629 (+) | False | cdh6 |
| XM_026941180.2 | mRNA | downstream | 899273 | 1965740 ~ 1976354 (+) | False | c21h5orf22 |
| TU370232 | other | upstream | 215346 | 820555 ~ 838522 (+) | False | jph1b |
| XR_004576918.1 | other | upstream | 741140 | 275159 ~ 312728 (+) | False | snap91a |
| TU369780 | other | upstream | 860634 | 189539 ~ 193234 (+) | True | pnrc2 |
| TU369781 | other | upstream | 860634 | 189539 ~ 193234 (+) | False | pnrc2 |
| TU369797 | other | upstream | 878327 | 174238 ~ 175541 (+) | True | G312191 |
| TU370320 | other | downstream | 62458 | 1128925 ~ 1131683 (+) | False | paxip1 |
| TU370328 | other | downstream | 65416 | 1131883 ~ 1136020 (+) | False | paxip1 |
| XR_003404390.2 | other | downstream | 899273 | 1965740 ~ 1977309 (+) | True | c21h5orf22 |
| XR_003404395.2 | other | downstream | 1066747 | 2133214 ~ 2143313 (+) | False | tgs1 |
| TU370902 | other | downstream | 1115512 | 2181979 ~ 2185677 (+) | True | G313112 |
