RNA id: XM_026940849.2


Basic Information

Item Value
RNA id XM_026940849.2
length 2882
RNA type mRNA
GC content 0.48
exon number 13
gene id meis3
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6997484 ~ 7008738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GcgcgagcgtgtgtgtgtgataagaaGGGGGGCGCGAGAGACCCCGTCGCGTTTTGACCCCCGAAACGACTCCCGATCTCCAGCATCGCTCCCGCCTCCATTCGGCTTTTTAAACCGGGCCCACTGCTCGCTtcgcatccacacacacacacacactcactctcacactctcactcacacacacacacacgcgcgcataTCCTTTTACAGCTTGTTGTCTCGGTCCATGGATGTGGTGATACACGGAGCAGATCGCCACACTGCCGCCGTGATCTGCGTCTCTCCAGCCCGCCGAGCAGCACCGATTCACCGCGGAacagcctgacacacacacacggagagagagcgagggagcaagagagagagagagagagcaagagagagagagagagagagagacagaggatcCCCGCGTCTCAAGTGATTGGGACTGGTGGTGTGTTCTGTCCCGGACTGCCGGATCGGTGTGTGTTGTCTTCCGCGAGAAGAGCGCGGCTTTCCGTGGCGCATGGAGAAAAGGtatgaAGAGCTGGTGCAGTACccagggtcagaggtcatgccCGTGGGGGGGTACGGGGAGGTGATGAGGTCACTACCGCCGCCTCACTATGGCCACGGCGTTCCTGACTCTCTCAAACACTACCGTGATCAGATCTACGGCCACCCTCTGTTTCCACTCCTGGCCTTGGTGTTTGAGAAGTGTGAACTGGCCACATGCTCACCACGCGACTCCAGCTCGCTGTCAAATGCGTCCCATCATCCCAGCATGACGGGTCACAGCGACGTCTGCTCTTCCGAATCATTCAACGAAGACATCGCGGCCTTCGCCAAACAGATCCGTTCAGAGAAACCCATCTTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATCCAAGTACTACGCTTCCACCTACTAGAGCTAGAAAAGGTTCATGATCTGTGTGACAATTTCTGTCATCGTTACATCACCTGTCTTAAGGGCAAAATGCCCACTGATCTGGTGCTAGAGGATCGCGAGTCAGGATCCAAATCTGACATGGAGGATTTCACTGGTTCTTGCACAAGTCTTTCAGAGCAGAATCAGTCTTGGCTGCGAGACACAGACGACTGTTTGTCAACGCCGTCAGGCACCCCGAGCGCCTCCTGTGGACTCGCCACGCACAGTGTGGACGCTTGCAGCGACGCTGGAGATGGACTGGATGGCGCTGTAGCGTCTCCCAGCACAGGAGAAGAGGACGAGACAGACCGAGACCGACGAAACAACAAGAAACGAGGGATCTTTCCCAAAGTGGCAACCAACATCATGAGAGCTTGGCTCTTCCAGCACCTATCACATCCGTACCCTTCCGAAGAACAGAAAAAGCAACTGTCTCAAGACACAGGACTCACCATCCTTCAGGTCAACAACTGGTTTATAAACGCCCGACGCAGAATAGTCCAGCCCATGATTGACCAGTCGAATCgctcagGTCAAGGTGCCCCGTACAGCCCAGAGGGTGGAGCGCTAGGAGGTTATGGATTAGACAGTCAGCCTCACTTAGGCCTTCGGACAGCAGGTCTTCAGGGAATGCCGTCTCTGCCTGCAGACTACCCCGGCGCGCTCTTGCCCCAGCCGGGCTACACCCATGCGGCGCCGTCGCTGCACCCTTACCCCGGCCCCCACCCTGCCATGCTACTGCACCCACCCCCTCATCCGCACTCCGCCGAGCCTCTAATTGGACAAGGCCTGGACATCCATGCCCACTGAGAGCGGGGGGAGGGGAAAGGGCTAACAGGAAACCGGGCTCACACACTCCGAGTGCACTAGTTTCACCTCAGTAACATGACGGCACCATGTGTAACATTGACACCATGTCATGTTATGACACTAACCCTTTATAATCACTGTCTTAAAAACTGACGAAACCttctatgtctttttttttatattacaaacTGATATAAGAGTCAACACAGAGTGGTATGGTTCAGGCTTTTTTCTACTGCACAAAGTACTGGAAATTTTGGCAACTCAAAACTGGATCTGGATTTTGCTTCATCAGCCAAAGTGCTGGGCTGAAGGTTTCCAGCTTTATAGTTATCAATAAGCACCAACAAAGAACCGATGGTACTCGGGGACATGCCACGTAAAATACTTTGTAGATTTGCCAACATTGTGCTGTACTATTTCTTAACATGTGccaacttttaattttaatttctttaaaaaaaacatagaagcacaacaaattatttttacaaacaaattaCCTTTCTTGATTATATGCAGTGCAATTTAACAGAGGTTCTAATTGTGTTCCAAATGTGCATTGTACAATGctattttcatcatatttttgTTGGCAATCTgttaaaagtaaattaatttaatcataGTGCAGATTTATTGATTAGTTCTTATTGTTGATGAAATGTAATAATCCATTAACAAGCCTTTTTCGGCCTGTAATTTCATTAATTGAATCGCTTATTCCATGTTGAATTTGACCATGGTGCTGTttactctcagaaaaaaagggtactaagtgttgttgttgttgatgtcattgttgttgttgttgttgttgggggTGGTGCACCTTTTGTATGTATcatttacctagaaaggtgccTCTAGTGTATCTTTAACGCTGTACTCTAAAAACTAAATATGGTCCTTTTTATGTACCTTAAGTCATTTTAAAAGCtacactatatccacatttccaggtgaaagatacatattaaaggaaaaacgaTGCATCCTTGATTCACAGTATCACCccgtgacaaaaaaaaagtagtttaaTACTGAGAGTGTTGCACCATAATGACAGAGTACTCATTTTTATGTTATATCTATGAATCTGGCAGAGAATGTCCCAGAACCCCAA

Function

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16671 MEIS3; homeobox protein Meis3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374158 lncRNA upstream 62307 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 81943 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 102867 6894337 ~ 6894617 (+) True G315886
TU374111 lncRNA upstream 270796 6726474 ~ 6726688 (+) True G315862
TU374042 lncRNA upstream 343421 6646145 ~ 6654063 (+) True G315811
TU374244 lncRNA downstream 24827 7033565 ~ 7033806 (+) True G315968
TU374285 lncRNA downstream 118953 7127691 ~ 7129877 (+) True G316000
TU374593 lncRNA downstream 417723 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 496341 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 556348 7565086 ~ 7568068 (+) True G316339
XM_026941503.2 mRNA upstream 14838 6971552 ~ 6982646 (+) True LOC113543373
XM_026941532.2 mRNA upstream 27536 6961944 ~ 6969948 (+) True ech1
XM_034297786.1 mRNA upstream 27953 6961943 ~ 6969531 (+) False ech1
XM_026941533.2 mRNA upstream 27953 6961944 ~ 6969531 (+) False ech1
XM_034297788.1 mRNA upstream 27953 6961944 ~ 6969531 (+) False ech1
XM_034314805.1 mRNA downstream 136663 7145401 ~ 7156229 (+) False atm
XM_034314802.1 mRNA downstream 136665 7145403 ~ 7203200 (+) True atm
XM_034314803.1 mRNA downstream 146972 7155710 ~ 7203200 (+) False atm
XM_034297691.1 mRNA downstream 250534 7259272 ~ 7355018 (+) False dscamb
XM_026941410.2 mRNA downstream 250548 7259286 ~ 7394464 (+) True dscamb
XR_004580329.1 other upstream 52876 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 770244 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1100654 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1777866 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1906387 5088101 ~ 5091097 (+) False sptssb
TU374286 other downstream 124721 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 686796 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1254601 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1259971 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1803219 8811957 ~ 8812820 (+) False LOC117599964

Expression Profile