RNA id: XM_026940890.2


Basic Information

Item Value
RNA id XM_026940890.2
length 3455
RNA type mRNA
GC content 0.43
exon number 10
gene id slc39a6
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8631553 ~ 8657599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACCAATGGGAAGTGCATCTACGACGTCTAAGTGGAGCAGTTCAGTAGTCGGCGCGACCTACACACGGAGTTTTAATGACGTGTAATTAGCAGTAGAGCTGAAaaagtgctttctttctcttacaTATCGCTGAGTGGCTCCTGTTCAGCAAAGATCACTGTTCCACAGATGGCAGTGTGGATACGGTTCCTGATTGTGGTGGCTCTGCTGCTGTTCAGGGCCTGCTTGTTGGGTGCAAATGGCAACTGCAACCCTCTTATTGTAGAGACGGACAGTCTTTTAGCAGAGAGAACACAGCAGCAGCATCTGCGTGCACTTTTCCTGAAGTATGGTGAGAATGGGACCATCTCATTGTCTGGTCTGCGAAAGCTGCTTGAGGGGTTGGGACTAGACCGCATCAGGAGAGTAACAGTGCAACACCATGGaaacaaacatgaacacacacacttgcatacacactcactaacacatgcacacaaacatgccGCACCCATACATTCTGCTGGTAGCAAGAAGGATGGTGATGTTTCAAGTGTGGAAAAGAGTGACTCAACCTCCAGTGTGCATCCTGACTCTATTTCCATGAAGAAGAGCCAATCGGATATTCACCACAATCTCTACATGAAGAGAGATTCTGATCCCACTGCTATCCTGACCACACCGTCATATGTCACCAAATCACGCCGGGTAGAACGCAGTGCAGACTACAACCTCATGGACTCGGACTCTTCCCAGCCCAATGCAACATACTCCAACGACACATACCACAGTGAGAGCACATCCACACACAACCTGGATGACCACCATGATGAGGATGAGCATAGCCCATTAAGCTATAACAGTCATGAGTGCCAGAATGCCACCATGATTCTGCAGATGCATGGCATGTCCCAAGAAACGACTCTCTCTGTTAATGACTTCAGCTTCCTTTGTCCTGCCCTCCTTGTGCAGATTGATTTTAAGTCCTGCCTTCTGCATGCTGACAACCAATCAGACTATAAAGATCActttcaccatcaccaccatcaacaTGATAAAGCTATTGGAAAACACCAGAAGAATCCTTCCATTCATATGGCTTGGATTGGAGGTTTTCTCTCTATCACAATAATCAGTTTGCTGGCTCTGGTGGGCGGAGTCCTAATACCACTCATCAACAAAGTCTGTTTTAACTTCCTGCTCAGCTTCTTGGTTGCCCTTGCAGTAGGCACGCTCAGTGGAGATGCCCTCCTGCACCTTATCCCACATTCTCAGGGTCACCACAAGCACCATCATGCTGCCAGTGAGAGCTTGGACCATGGTCTCCATGGCGACAGTGAAGATTCCCTTAAGCCTGTTTGGACAGGGTTGACTGCATTGGGGGGAGTCTACATCATGTTCCTCATTGAGCACTTCCTGACCCTTGCAAAAATGttcaaagataaaaaacaaaaggtGCAGAAGAGAGCAGACTTTGCTGTTGAAATTTTAGATTCTCAGAACGTGGCAGACCCTAACATTAAACCACTGGATGACTCTGAGGTAAATGGCAGGCATGCATGGGGACAGGGTCTGCCAGAGGAGGAAGAAGTGATGTTATCTCAGGGTTGTTACACAGATGAAGATTGTGAGAACAAGTGCCACTCCCACTTCCACGACACTGTTGGCCAGTCAGACGAGCAGCACCACCATCACCACAACTACCACCATATTCTGCATCACCACCACTCTCAAAACCATCAcccccacactcacacacacagacatacacactctTATTCTGTCCAACATTTCGAGAATGCTGGGGTTGCCACCCTTGCCTGGATGGTCATTATGGGGGATGGCCTGCACAACTTTAGTGATGGGCTGGCTATAggagcAGCCTTTACAGAGGGTTTATCTAGTGGTCTTAGCACTTCAGTCGCTGTGTTCTGCCATGAGCTTCCTCATGAGCTGGGGGATTTTGCAGTTCTTGTGTTATTAgatctgttgtgttttagatCTGTTAGATTAGATGTGTTTGATACTCATTTGATGGTATCCTCCTCTCTCGCCTTGAACATTGTGTGGGCATCCAAGGTATTGGTCATAAATGGTTTACTTTCCTATCTGTCAAACAGAAGTTTCTCGGTTTGCCTTGGGAAATTTTCTTCTGCTGCAGCTCCTCTTACTTGTGGGGTCCCACAGGACTCTCTTTTAGctcctgttttgttttacttaTATATGCTGCTGTTAGGGACTATCTTTAGGAAACATAATGTATCATTTCACTGCTTTGCGGACAATTCTCAAATATACCTACCTTTGAAATTGAATGACACAAATGCTTTACAACCCCTGGCTTGGCTTGTTTAAATGATTTGAAATCATGGATGCCATTTAAATTTTTTGAATCTCAacgaaaacaaaacagagattGTTGTATTTGGTCCTTCTGATGAATATTATATCTGGAATCAACTTTGGCCTATTAACTTGCTTCtttcaatttgtttttaaatctctaaatGGATTGGCATCAGCCTATATATCCAATCTCTTATCCATGCACAATCCATGAAGGTCCCTTAGTTCAGAACAGAGGCTGTTGACTGTTCCTAGGTCAAGATTAAAATTGAGAGATGATCATGTCTTTTCATTAGTTGCCCCAAAACTATGGAACAGTCTACTCATTCAAACTGAACTGCTTCAACGTTATATGATTTCAAATCTAAGTTGAAGTTATTTGTTTTCTCTGGCTTTTAATGCATCATAGAGAGTATTTGATCTCAGTTtatctgtgttgtgtgtgcaaCTGTTTGttccgttttgtttttttttgttttttttgttttttagtttctGTATGTACAGTGCTTTGGTCAACACTGTTGTTTTAaattgtgctatataaatagaTTGACAgtgatataaaaagtctacacacccctgttacatttggggtttttgtgatgtaaaaaatgaaaccaagtggaaaaacaaatataaacattttaggggaaaaaaaacttaaaataacctGAGTTAAATGAGTGTGTATACcctttaactaatactttgttaaagcaccttttgcttcttatacagcactcagtcatttttgagtaagagtctaccaacttggCACCTGTTGATTTGGCATATGTTATTCCTTGcgaaaatgctccagatctgtCAATCTGTGAGGGGATCCCTTGTGCACAGCTCTTTTAAGTCATTCCATAGGCTTTTGATGGGATTTAGATCTGGGATCTGACTGGACCATTACGAAAAGTTTAtcatcttctgaagccattcctctGTTGACCTGGATTTTTGTTTTGGGTGATGCTGGAAGGTAAactttttcttcatattcagCTGTCTAATAGAGGTTTGCAGGTTTTGTgtcaaaatagattggtatttggagctattgAAGATTACCTCTGTcctgactagagccccagtcccagctgaagagaagcagcccca

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0071577 zinc ion transmembrane transport biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14712 SLC39A6, LIV1, ZIP6; solute carrier family 39 (zinc transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375442 lncRNA upstream 44461 8587995 ~ 8588211 (+) True G317008
TU375146 lncRNA upstream 255579 8376785 ~ 8377093 (+) True G316756
TU375144 lncRNA upstream 299141 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 300886 8331506 ~ 8331786 (+) True G316752
XR_004580332.1 lncRNA upstream 370960 8260724 ~ 8261712 (+) False LOC113543009
TU375461 lncRNA downstream 9104 8661286 ~ 8661776 (+) True G317027
TU375465 lncRNA downstream 37253 8689435 ~ 8691471 (+) True G317031
TU375493 lncRNA downstream 74159 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 141532 8793714 ~ 8793944 (+) True G317113
TU375601 lncRNA downstream 153088 8805270 ~ 8805725 (+) True G317125
XM_034314631.1 mRNA upstream 1335 8616397 ~ 8631337 (+) False LOC113542997
XM_026941126.2 mRNA downstream 15102 8667284 ~ 8678094 (+) True gtpbp4
XM_026941219.2 mRNA downstream 105775 8757957 ~ 8786203 (+) False med17
XM_034297747.1 mRNA downstream 106480 8758662 ~ 8786203 (+) False med17
XM_026941220.2 mRNA downstream 106892 8759074 ~ 8786203 (+) False med17
XM_026941221.2 mRNA downstream 106939 8759121 ~ 8786203 (+) False med17
TU375135 other upstream 363474 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 368611 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 936753 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1497171 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1688064 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 159775 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 760141 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1307147 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1535569 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 1884249 10536431 ~ 10562994 (+) False capn10

Expression Profile