RNA id: XM_034314636.1


Basic Information

Item Value
RNA id XM_034314636.1
length 3661
RNA type mRNA
GC content 0.38
exon number 14
gene id LOC113543000
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8552247 ~ 8585499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAAATTTCCACAGATGGAACATTCTTTATTCAAACAGTCATTCAGACAGGCACAATTTTACCCAAAAACTGCAAGAAATTACTGGTGCACCCAAGATGGGGACCTCAGTGTGTGATTGAGAGACTGTATTAATTTGACATTCATTCGTCGTATCGCCTGACCCATCAATGGAAGTATGTTACCAGCTGCCGATGCTACCGCTGGACCGGCCAGTACCGAAACACGTCCTCGGCCGGCGTGGTGCCATCTGCATCACCTCGAGCTCGGGTTTGTTCGGTGGTCCTCTTCCCCGCCAACTCTCAAAGAGACGAGGAGCGGTTTCGTATGACAGCTCAGACCAGATGGCTCTCTACATCCGCATGATTGATGTTCGATTGAGAGCTCAAACAGGTAACACATCGGAGCAATCAGAAAGAGATGAGTGGAAAGACAGACAACAACACACAAACTTCTGCACGGACTTCAGAACTCTGCAGTGGTGTTTTGGTGTTGTTTGTGCAGCGCTGACAGACACCGTGACATCAGAAGTGGAACTGCAGCCAGTTAGAAGTACTCTGAGCATTCACAAGAACTTGCAGGCTTCATATTACCACCGAAATGACACACACGATATACACCCCACACTAGACCAGGAGTACATTAAACAAGCTAAgTGTATGCTGCAGAAGGTTGGAAGCTGGAACTTTGATATCTTCTTGTTTGATCAACTCTCTAATGGAAAGAGTTTAGTGGATTTGACTTTTCACCTCTTCAGTGAATACAGTCTAATAAAGCTCTTCCGACTGGATGTGCTCAAACTGCGGCATTTTTTAGTAATGGTACAGGAAGCCTATCACAGTCAAAACCCCTATCACAATGCCCTCCATGCTGCTGATGTCACACAGGCTATGTACTGCTACCTGCAGGAaccacagCTATTTGAGTCTCTGACATCCTGTGATATCCTTTTGGGTTTGCTGGCTGCAGCAACTCATGATTTGGATCATCCGGGTGTCAATCAAACCTTCCTTATTAAAAGCAGTCACCACTTGGCCTTGCTCTACCAAAACTCGTCTGTTCTGGAGAACCACCACTGGAAATTTGCTGTCAGCTTGTTGAGAGAGTCAGGTCTTCTATCCCATTTATCATCTGCAGACAggcaGAGCTTGGAGGAACGATTGGGTTCTCTCATTCTGGCAACTGATATCAGCAGACAGAATGAATACCTGAGTGAGTTCAGAGCTCACCTAGACCGAGCTGACCTGCGCTTGAACAACAGTCAGGACAGGCACTTCATATTGCagatGGCTCTGAAATGTGCAGATATCTGTAACCCATGTAGGCCCTGGCACCTTAGCAAGCTGTGGAGCCACAAAATTACTGAAGAATTTTTTAGTCAAGgtGACATTGAGAGGAGAAGAAATCTGGACTTGAGCATTCTGTGTGACAGAAACACCTACACTGTGGGCAAAATACAGATCGgGTTCATATCATTTTTGGTGGAGCCATTGTTTTCAGAGTGGGCTCGTTTCTCAGAAACACCACTTTCCCATATTATGATAAGTCACATGACTTCAAACAAGTTCAAGTGGACACACCCACCACAAGAGAAAATGGGAGAAACTACCCAAAGCACATCCAAGACCCTATCTCAAGGCAGCCTGGGGTCATGacatcttaaacacacacacacagtccaaacatcagaaatatttctaatatttcttgtttaaatgtaatttatttatttaaggagcacttttcatttacttttacgTAAATGTAATACATATACATAGATAGCAATACATAGATACCTCACACTACCTGTTCTTCCAGTGCTTATCACCCTGATTAAGTTTAATTCATCttgttttaaaacactttaaatcatttaaagggAATAGAAACCAATTGATACACAGATACTTATAATTGAACTGAACCAGTATGTGCTTTCTTGGATTAATATGCCATTATGCTGTAGAGCTCACTAGTGAATGCAAGAGTTTATATTCTCTCCTTATATGTGCCGTACTTCACTCATTCACTGGTATTTAGCCCTCcctctccacaaacacacatacatacccACACACAGATACTGAATTAAGTTCACTGAAGGAATAGCATGTTTCTGTCTTTACACTGTGAGCAGACTGCACACAAACACCTGCACGATTAACACTACTACTGGCTATgttaacacatacacaaatgcacacaaacaccatTCACATTGAATTatggtgtgtttatttttaggtTCTGGAAAGCCAGCCAGTATTGTGGAAAATACTACAGAGGTTGCACTCTCCATAGACACTGATCAGATAAAAGAACAGTGTTACATGCCCCAATAGGTTGTAATGACTTTATAGCAGTTTATAAAGACAATGAGTTTTAAAGCCTTTATGACAGTGTTTTTAAAGACAATAAAATGAAGTGAGTCCATATGCCTTGCAAAAACAGTTATTCTATGAGGATTATAAAACCTTTATAAAGGCTTTATAATGGGCTTTATAAAGGCCCATAGGAGTGAACAGTTTGAGAATTTGTGATGTAAGCAGCTGGTATCTAAGCTGTGCACTATGTTGAGTGACCAAACCTTTTAGATGGAGAGACTTctatttctttcattccttttgTGAGTGATTTGCAGagattttttgctttttgttttaatgttgcAACATCCCAATTTCACTTTTACTTGATCTAAGCTTGGCTTAACTCTTCCAGTAGATACCAATTGAGAATGATACTCAAGgttatgatttttctttttaattcttaaaaaaaagggcaaaatattctgaatttacacacacactcatatttctgacatatttttgcatttctctAACCTGGCTTGAGAATGTTGTTTACCATTTTTTGAATAGAATCTTTTAGAGAAGGGGAGCAGTTTATAACATTTTGCCAAACTGATTTTTATACATACcaatcactgtaacacttctattaataaaaatataaattgacAGGGAAATCATTTTTGTGGTTTTAACatttgttgtttacatttaattattttccatccCAATGTTCACAGCCCTTGGTGTCTGCCTGTGTTATGTTGAATTTAGGTGGAACTTGTACACTGTGTAAAACTTTTGATGTCACACAATTGTTTTAATTAGGATGATATTTAGGATAACGCAACATTACCCATTGTTGTTACACTTGATTCCCAATTTCCAGGGATTAAAGACttaaattttttctttcatcttagAAGTGACCTTAAATTAACGCACATTTTACAAAACACTATTTTACTAAAGTAGAACAAtaactcattaataaattaaacagtaaCCCTGTCCCATTCATTATTCACtatgaataataaaaagtaataatgtaTAACTTGAATTTGTATCTTTTTTAAGCAAATGCTGCACTAATTTTGATACAAAAATCCTTTAACTTAGCCCAAACataggttttattattattattattattattgttattattattattattgttgttgttgttgttgttgttgttgttgttcaatTCTGTATTGTACTCCTTTGCTGTAACTCATTGTTGTCTAACAAAATGAATTAAGTTTGATGATTCGGCCAGTCTGTTGGCCATGTTAGAACTTTATGCATGTTGATCGCTCAAATAAAATTGAGAATTGGTGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375146 lncRNA upstream 175241 8376785 ~ 8377093 (+) True G316756
TU375144 lncRNA upstream 218803 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 220548 8331506 ~ 8331786 (+) True G316752
XR_004580332.1 lncRNA upstream 290622 8260724 ~ 8261712 (+) False LOC113543009
TU375132 lncRNA upstream 290626 8259258 ~ 8261708 (+) True LOC113543009
TU375442 lncRNA downstream 2496 8587995 ~ 8588211 (+) True G317008
TU375461 lncRNA downstream 75787 8661286 ~ 8661776 (+) True G317027
TU375465 lncRNA downstream 103936 8689435 ~ 8691471 (+) True G317031
TU375493 lncRNA downstream 140842 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 208215 8793714 ~ 8793944 (+) True G317113
XM_026940904.2 mRNA upstream 47104 8504015 ~ 8505230 (+) True LOC113543002
XM_026941421.2 mRNA upstream 75362 8467382 ~ 8476972 (+) True adhfe1
XM_026941189.2 mRNA upstream 90207 8437381 ~ 8462127 (+) True slco5a1a
XM_034314780.1 mRNA upstream 90207 8439182 ~ 8462127 (+) False slco5a1a
XM_026941192.2 mRNA upstream 120087 8428127 ~ 8432247 (+) True lactb2
XM_034314630.1 mRNA downstream 30898 8616397 ~ 8631337 (+) False LOC113542997
XM_034314631.1 mRNA downstream 30898 8616397 ~ 8631337 (+) False LOC113542997
XM_026940893.2 mRNA downstream 30898 8616397 ~ 8631337 (+) False LOC113542997
XM_034314632.1 mRNA downstream 31724 8617223 ~ 8631337 (+) True LOC113542997
XM_034314634.1 mRNA downstream 31730 8617229 ~ 8631337 (+) False LOC113542997
TU375135 other upstream 283136 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 288273 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 856415 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1416833 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1607726 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 226458 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 826824 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1373830 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1602252 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 1950932 10536431 ~ 10562994 (+) False capn10

Expression Profile