RNA id: XM_026940923.2


Basic Information

Item Value
RNA id XM_026940923.2
length 2321
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC113543011
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4283167 ~ 4290110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catttataatctTCATTCATTTTGCTTTCTCCCAGGCAAGAAGTTTTACATGCAGCTTCTTATCATGACTATGAGCTCAGGGCATTTTTCATGTAGTTTAGCTGGTTTGTATAGTTTCTATCATAGACTATCAGTTGTTGTGAGCTATAAGGGTAGTGCATTTAAGCATTAATGATTAATCCTGTAGGAACATTAAAACTCTGCTTTCTTTGGAAGTTTCCTAGGAAGCACTGATAGCCATTTTATTGTTCAAAGGCAGTATTCTTATAAGACAGATATTTTGAAGAGCTCTTAGTCTTAAAGAAAGCACTGTGTGCAGAAAATGCTGGACTGCAGGAAAGCCATGGATCTTAGCAGCCCACAAGACAACTCATTAGGATTCTCCTCCACCATCTTCGTCTGCCTGTATTTATTGGTCTTCGTGGCTGGTCTGTTCCTGAACTCCATGGCTATGTGGGTGTTCTTCCAGATCCGCACGCAGAAGCGAACCTTCATGCTGTACCTGCGCAACATGGTGGTGGCTGACCTCCTTATGACTCTCACGCTACCAGTCAACGTGCTTATTGAGGCCAAAGTGGCACCTTTGTGCCTTCAAGTCGTGTCGTGCAAATACACAGCCGTGCTCTTCTACTGCTGCATGTACACCAGCATCCTCTTCCTCGGATTGGTGGCGCTGGATCGCTACTTAAAGATCGTGAGGCCGTTCGGTGGAAAGTGTGGCGCTTGTCTTTACAGTTACTCATTCACTGTAGCCATGGCTGTTATGGTGTGGTTTTCGATGATGGCTCTTTCGCTTCCCAATACaatactgaccaatcagactatACCAGAGAACCTGAATAACTGTGCAGAGCTAAAGAGTAATCTAGGTATAAAATGGCACGGAGTGGTGATCTACATCAACATACTGATCTTCTTCCTAGTCCTGATTACTCTGCTCACCTGCTACTTAGCCATCTACAGACACATCCATCGATCCTCTGCCCAGTTTGTTATAGTCGGAGAGACAACTCCGCATAAGGCCAAGAAAGGGCAGAATATTCTTATCTTACTGGTTGTGTTTTTTATCTGCTTCGTGCCTTATCATTTATGTAGGATCCCATTCACCAAAAGCCAGACTGATGGCGTTCAGATGGATTCTACATTGCTGAATGGGAAAAAAGCAACCCTCTTGATGTCTATGTGCAATGTGTGTCTGGACCCTATCATTTACTTTCTCATGTGCAAGTCTTTTAGAAGCAAGCTATTTCATACACTGGGATTCTGGACAATCAGTGAGAAACTGTCCGTATACTCTTCGACATCTGCAAGGAAAACACCAGTAGTGATGATCTTTAAGGAAAGCCCACCTTGATAAGGAAAATCAGTGCTGTGTGGACATAAAGTTTATATGTAAATTATGGCAGCGGATAAATCTTGCAAATGTATACACTCTCACCAGTAACTTTAAGAGGCTCAGTTaaagaaactggacagttaaagaccagctgatgtttttccaatcttcagttgtccagtttcagtgagcctgtagcctcagattcttgttcttggttaacaggagtggaacacaatgtggtcttctgctgttgaagcccaTCTGTCTCAAATTTCAAtatatgcattctgagatgcttttctgctcgccatGGTTGTGAATAGTGGTTATTTGACATAATGTAGCATTCTGTCAGCTCAAaatagtctggccattctctgacctctcttatgaACAAGtcgtttttgcaccattctgtgtgaactctagagactgttgtgtgtgaaaatcccaggagatcaacggCTTTTAAAATACTACCTAAAACGACCATGCCATGCTCTCTCAGGTCACATttgttttccccattttgatgcttgatgtgaacattatgtGAAGCTCCtcacctgtatctgtatgatttcatgcattatgctgcttctacttgattggctgattagagaattgcatgaatgtgcaggtgtacagatggTCAGTAAGTGTACATAAACTGTGTATATGCCTGTATATATGCTATTTCATATTAGCAGAAATGTATATATTCTGATTATTGGCTTATCACTGTTTACAatggatttttttatattaaaaaataacttaaaGAGTCTAACCACTGTTCTTTGTAGTTTACAATATAAAACCGAAGATTCTACATTTGGGTACATAAAGCTCATCTCTTTTTATATGACTCTGTATGacaaaaattgtttaaatgagCACCATATAATGATAAACTACTGTTGTGAAATCTTGTGGAATGACTATAAAGAATATTCTTTGATTAAAACTACTTTTAACATTG

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372207 lncRNA upstream 286487 3996502 ~ 4000314 (+) True G314222
XR_004580328.1 lncRNA upstream 391116 3888027 ~ 3895685 (+) True LOC117599982
TU371944 lncRNA upstream 440706 3845857 ~ 3846095 (+) True G313990
TU371896 lncRNA upstream 466892 3773070 ~ 3819909 (+) True G313949
TU372364 lncRNA downstream 144 4290254 ~ 4293729 (+) True G314362
TU372366 lncRNA downstream 4755 4294865 ~ 4295074 (+) True G314364
TU372412 lncRNA downstream 89527 4379637 ~ 4384865 (+) True G314402
TU372416 lncRNA downstream 227491 4517601 ~ 4527820 (+) True G314404
TU372431 lncRNA downstream 398859 4688969 ~ 4762095 (+) False LOC113543063
XM_026940971.2 mRNA upstream 9843 4267090 ~ 4276958 (+) False LOC113543038
XM_026940970.2 mRNA upstream 9843 4270065 ~ 4276958 (+) True LOC113543038
XM_026940995.2 mRNA upstream 23515 4258365 ~ 4263286 (+) True LOC113543045
XM_026940994.2 mRNA upstream 23515 4258396 ~ 4263286 (+) False LOC113543045
XM_026941338.2 mRNA upstream 29967 4252748 ~ 4256834 (+) True p2ry12
XM_026940950.2 mRNA downstream 10689 4300799 ~ 4308052 (+) True wdr53
XM_026941425.2 mRNA downstream 25633 4315743 ~ 4350544 (+) False LOC113543315
XM_026941423.2 mRNA downstream 25635 4315745 ~ 4350544 (+) True LOC113543315
XM_026941424.2 mRNA downstream 25635 4315745 ~ 4350544 (+) False LOC113543315
XM_026941172.2 mRNA downstream 86884 4376994 ~ 4533974 (+) True cux1b
trnap-ugg_21 other upstream 339795 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 658688 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 660771 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 661304 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1397413 2889315 ~ 2889388 (+) True trnat-agu_12
XR_004580320.1 other downstream 302330 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 646938 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 646938 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 646938 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 797991 5088101 ~ 5091097 (+) False sptssb

Expression Profile