RNA id: XM_026940928.2


Basic Information

Item Value
RNA id XM_026940928.2
length 1924
RNA type mRNA
GC content 0.52
exon number 2
gene id c21h7orf25
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2714439 ~ 2717698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATAACACAGCAAGAACAGTTCTATcgacgaagaagaagaactcACACGACGTAAACTGCTGCTAAAGCAGCGTAGAAGAAGTCGACTGTCGCTAATAGCTGCAGGGCAGTGCCGAATTTTCTGGCTGAGTAAAGTCACAGCGATGGCCACCAGCCCGATGCTCCAAGAATGCATCCAAACAGCTGAGGACCTGCTGAAGCGAGTGGATCTACTGTGCAGCCGCCAGAACCAGGAAGTAGAAGGTCGTGCCAAACTGTGCAGCAAACTCCGCGCTGAGCTCAAATTCCTGCAGAAAGTGAAAGCCGGACAAGTCGCAGTCAAAGAGTCTCACCTGCAAAGCACCAACCTGACTCACCTGAAAGCCGTCGTCGAGTCGGCCGAGAGCCTTGAGAACGTCATCAGCGTTTTGCACGTGTTCGCGTATGAGGGTCCGGACGGACGGAAGCAGACACTGGTGGTGGACGTGGTGGCAAACGGAGGGCACACGTGGGTGAAGGCCATCGGGCGCAAAGCAGAGGCGTTGCACAACATATGGCAGGGCCGAGGGCAGTACGGCGACAAAAGCGTGATCCGGCAGGCGGAGGATTACCTGGAGGCCAGTCGCCAGCAGCCCATTCAGTACAGCAACCCGCACATCATCTTCGCCTTCTATAACGGCGTCTCCAGTCCGATGGCCGACAGACTCAAAGAGATGGGCATCTCTGTTAAAGGTGACATCGTTGCTGTGAACACGGTGGTCGGATCAGATGAGGATGAAGACGAGGATGAAGAGGACGGCGATTTCGCACAGAACGAGCAGGACGTTGAGGATGGCGCTGAGGACGATGATGAGGAAGTGCAACTCATGCACACCCGTGTGGACCGAGACACTGTCGTAGCGAGCCTGGCGTTCCCCACCGACGTCAAGGTAGCCGAGTGTCCACGCGTAAACGTCGACATCACCACGCTCATCACGTACGTGTCGTCTCTGAGTCACGGGAACTGCCACTTCACCTTCAGGGAGTATGTGCTGACTGAGCAGGCTGCTCAGGAGCGCCAGGACAAGGTGCTGCCCAAGCTCGACGCCTTCATGGAGGGGAAGGAGCTTTTCGCGTGCCACTCGGCCGTGCAGGACTTTCGCACCATCCTCGACACGCTGGGTGGCCCTGGCGAACGCGAACGAGCCGAGAAGCTCCTCGCCAGGCTCACCGTAGTTCCCGATCAGCCCTCGGAGCGCACGCAGCGCCTCGTAGCCAGCTCCAAGGTCAACCATAGGTCGCTTATGATCTTCGGTACTGGTGATACTCTCCGCGCTGTCACTATGACCGCTAACAGCGGGTTTGTTCGCGCTGCTGCTAACCAAGGCGTGCGCTACAGCGTGTTCATCCATCAACCTCGAGCGCTGACGGAAGGCAAAGAATGGAGAGCCACACCCATATGACGGACCTGAAAGTACAGACAGACATCCTAACGTGAACTCAAACGACTGAACGCGTCAGAAGTGTGTGGAGTTACAGTAGCACTTTAAACGATGCCTGATTTATTCAAAACACTTGCAAgaggcatttttattttcatggttTCATACAGCTGTGCACAAGCTACACAGCTGGGCTGCTAATACAGACAGCATCTATGCTGcgtttaagtttttttttttttttttttaaatctcttgcagcttgatttatttttttttttctgaactcaGTGCCTCGATCTCAGCCTGCAAACCAAATGACACGGTTGTGGTGGAAATATAACGTCAAACACAGAACCACAGATATCGTATACTACATTTGTATCCTGTCTGAAGAAATAATGAGACATTGTTTGAATATTTGTTTTGCAATCTGTATGCTTGGATGTGCATCATGAAAGGcacaatgtgcttttttttttttgttctgcacaaagttcaaataaacatccaaaaaaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371292 lncRNA upstream 39793 2674433 ~ 2674646 (+) True G313443
TU370833 lncRNA upstream 591005 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 737724 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 819492 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 1073713 1624563 ~ 1640726 (+) True LOC113543035
XR_004580285.1 lncRNA downstream 13517 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 17421 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 71544 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 224789 2942487 ~ 2945207 (+) True LOC113543325
TU371493 lncRNA downstream 358351 3076049 ~ 3076370 (+) True G313607
XM_034314885.1 mRNA upstream 53018 2655200 ~ 2661421 (+) False LOC117599997
XM_034297694.1 mRNA upstream 59291 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_026941358.2 mRNA upstream 388959 2319874 ~ 2325480 (+) True dsela
XM_026941102.2 mRNA upstream 395572 2298126 ~ 2318867 (+) False tmx3a
XM_026941137.2 mRNA downstream 1061 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA downstream 1061 2718759 ~ 2728068 (+) False ralab
XM_026941205.2 mRNA downstream 90729 2808427 ~ 2834932 (+) True plcd1b
XM_026941204.2 mRNA downstream 100044 2817742 ~ 2834932 (+) False plcd1b
XM_026941250.2 mRNA downstream 142587 2860285 ~ 2871256 (+) True hhatla
TU371295 other upstream 38591 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 38591 2675322 ~ 2675848 (+) False G313445
XR_004580350.1 other upstream 52040 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other upstream 52040 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other upstream 53018 2655200 ~ 2661421 (+) False LOC117599997
trnat-agu_12 other downstream 171617 2889315 ~ 2889388 (+) True trnat-agu_12
trnas-aga_13 other downstream 907718 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 908262 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 910334 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 1229237 3946935 ~ 3947006 (+) True trnap-ugg_21

Expression Profile