RNA id: XM_034314625.1


Basic Information

Item Value
RNA id XM_034314625.1
length 1070
RNA type mRNA
GC content 0.45
exon number 4
gene id tmem70
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 898058 ~ 901624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTTCCTGAGCAGCTCTCAGACAACATGCACAACTTCTGCTCTGAGCTACAGCCATCATTTAGTGCAGTCACTGCAGAGGACATCCTCCACATCCCAGATCAATAagACAAGTGAGAAATCCTACTGTAGAGTAGACTGGATTACGTTACTTCCTGCATATGACTCGGATCTTCTCCACTTCTCCGCTGCATGTGTTTTATAATCATCAGATTAGCTAAATACCAGATTCGAGCCTGCGCGTATGGACGATGTTATTCCTCACGGCCGGGCAGCACCGAGGACGGAGTTCTGATCTACACGGGCAATCTGGGCAAGGCCGTGCTCGGTGTGAAGTTTTTCTCGTACTCCAGCAGCATGTTCAGTTTGTGCATGATGCCCCTCATCCTCACGAAGACGGGCATCGGGGTGAGCAGCTTTGCGATGAAGGCTGCGTTCTGCGGTTTTATCGGCTTCTTCACGTTCCTGACGCCGGTCCTCCTCCACCTCATCACCAAAGGCTACGTGGTGCGCTTGTATCACAACAAGGAGACGGACGTGTACACGGCCGTCACGTACAGCGCGCTGCTGGTGGAGAAGAAGACCGTGTTTCACCAGAGTGACGTCAAAGTCCCGGACGTGAGCCGCATGTTCACGAGTTTCTACGCCAAGAAGCGTTCGATGCTCGTAAACCCGATGCTGTTCGACGTGCCACACGACTACAATCACCTCATGGGCTACGATCAGCCTTTCTCCTTCGACCCGGAGGACATAAATAAACCTGATCAAAATTAGCCGCTGTCActcttcattttaaaactttatgaAAAGGacttgaaaatgtaaaaaagtacaAATTGCTTCGTTTATCTGGTAAAACTTGGTATAtctataatattgtataatattttaaacattagcacattattaaaaaaaaaaatccttgataGAAGTGAgttttgtcctccatgttgttCACTCTGAAAGCTAAGAAGGACAATGCTCCTtcaaatttgtccaaaataatCATCTTTAGACCTCAACTGTTTTTAcaataatgttatattaaattaaaatagattttacgCCGTC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370257 lncRNA upstream 12104 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 22338 875663 ~ 875880 (+) True G312531
TU370220 lncRNA upstream 31497 862387 ~ 866721 (+) True G312509
TU370234 lncRNA upstream 75472 821262 ~ 822746 (+) True G312517
TU369922 lncRNA upstream 155089 739463 ~ 743129 (+) True G312283
TU370266 lncRNA downstream 4610 906234 ~ 906446 (+) True G312540
XR_004580327.1 lncRNA downstream 74997 976621 ~ 980051 (+) True LOC117599981
XR_004580295.1 lncRNA downstream 188234 1089858 ~ 1104324 (+) True LOC117599954
XR_004580318.1 lncRNA downstream 461752 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 462612 1364236 ~ 1368869 (+) False LOC117599969
XM_026941381.2 mRNA upstream 24452 868721 ~ 873766 (+) True rdh10b
XM_026941377.2 mRNA upstream 51201 820530 ~ 847017 (+) True jph1b
XM_026941295.2 mRNA upstream 170353 723451 ~ 727865 (+) True cbln2a
XM_034297687.1 mRNA upstream 180940 704778 ~ 717278 (+) True LOC113543349
XM_026941468.2 mRNA upstream 203880 683806 ~ 694338 (+) True LOC113543348
XM_026941207.2 mRNA downstream 45168 946792 ~ 965617 (+) True trpa1a
XM_026940965.2 mRNA downstream 102285 1003909 ~ 1012192 (+) True shhb
XM_026940830.2 mRNA downstream 152244 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA downstream 152244 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA downstream 152271 1053895 ~ 1066467 (+) False cnpy1
TU370232 other upstream 59696 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 585490 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 704984 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 704984 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 722677 174238 ~ 175541 (+) True G312191
TU370320 other downstream 227301 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 230259 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1064116 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1231590 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1280355 2181979 ~ 2185677 (+) True G313112

Expression Profile