RNA id: XM_026940933.2


Basic Information

Item Value
RNA id XM_026940933.2
length 2107
RNA type mRNA
GC content 0.49
exon number 6
gene id klhl40a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2872529 ~ 2878715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCTGAGTGGCAAAGCTACACTACACCAgcctccatttctctctcataGAGTCACACTGTTAATCCGACAAGTCCAGCAGTGGGAGCGGAGCCGGACACCCTCCTACTTAAATATCAAGCTAACATTGCCCACGAAAACCTGGCAAGATGGCCGCCGTGCCAGTGGACCCAGTGACAGAGCCACGTATGTACCAGCAGTCGCTTCTTCTGGGAGGCCTCTGTGAACTTCTCGAGAATGACAAGTTTGTGGACTGTGTCCTGAAGATTAAGGACCAGGATTTCCCTTGCCACAAGCTGGTGCTGGCCGCCAGCAGCCCGTACTTTAAGGCCATGTTCCTCTCTAACTTGGAGGAGAGCAAAAAACGAGAAGTAGTCCTGAAAGATGTGGAACCAGGCATCATGGGCATGATTCTAAGGTACCTCTATACCTGTGACATCAACCTGACTGAGCAGAACGTCCAGGACATCTTCATGGTGGCCAACAGGTACCAGATCCCTTCCATCTTTAGCGTTTGTGTATCCTACCTGGAGCATAAGATGGTGTTGAGCAACTGTCTAGCCATCTTCAGGCTTGGACTACTGCTGGAGTGCCCGAAACTGGCAGCAAAGGCTCGGGACTACATTTGTGACCGCTTTGAGCTCATCATCCGGGACAAGGACTTCCACCAGCTAGGATCTGGAGAACTGGCTGCCATTATCACGTGTGATTCCCTTAGTGTGGAAAAGGAAGAGAAGGTGTTTGAAGCTCTAATGGAATGGGTTGAGTATGATGAGGTTGAAAGGCTGAAGGATCTGCCAAAACTTCTGCACTGTGTACGGTTTCGTCTGATGCCACCTGCTTATTTTAAGGAGAAAGTGGAGGGGCACCATTTGATCAAATCTAACCAGGAGATCAAGAAAGATCTGCAGCTTATCAAGGATGCACAAAAGGGACTGCTGCCCAAAGTCAGAGGGCCATTAGGCAAGAAGGCAGGAGCCACAGTaggtgatgaagatgaggatgaaaatgatgaggGTCTGCTTCCTGGGATCCTGAATAATAACCTACGCTTTGGAATGTTTCTAACGGACTTTATAGTAATGATTAGCGACACGGGAACGGTTGCCTACGACCCTGCTGAAAACGAATGCTACTTAGCCTCTTCATCTACTGAGATACCAAAAAATCACTGCAGCTTGGTGACCAAAGAGAATCAGATCTTTGTGGTTGGAGGGCTCATATATGACGAGCAAAACACAGAGGAACCGTTCAGCTCTTACTTCCTACAGTTTGACCCCATGAGCTCTGAATGGCTCGGGATGCCCTCACTGCCAAACCCCCGCTGCCTCTTTGGGCTCGCTGATGCCAAGAACTCCATCTTTGTCGTAGGTGGAAAAGAGCTGAAAGAGGGAGAGCATGCTTTGGACACTGTCATGATCTACGACAGACAATCTTTCAAATGGGGTGAATCAGACCCAGTTCCATATTCAGTCTATGGCCATGGGACTGTCTCACATAACGGACTCATTTACATCCTGGGTGGAAAATCAGAGAGCAAGAAGTGCCTGAGGAGAATGTGTGTCTACAACCCCTCAAAGTTCGAGTGGAAGGAGCTGGCGCCTATGAAAACCGCTCGTTCCCTGTTTGGTGTCGCTGTCCACAAGAACAAAATCTACGTGGTGACAGGAGTCACTGACGATGCTCTGACCAGCAAAGCTGAGGTTTATGACATCGCCAAAAACACGTGGTCTGAGTTCGAGGAGTTCCCCCAGGAGAGAAGCTCTCTGAACCTGATCTCGCTGGGCAGCTGTTTGTACGCGGTGGGAGGCTTCGCCATGATGCCCAACGACACCACAGAGAAGCTGGAACCCACAGAGATGAACGATATCTGGAGGTTTGATGAGGAGGAAAACTGCTGGTCTGGGATGCTGCGGGAGATTCGCTATGCTTCAGGCGCCACAGTGTTAGGAGTACGCCTCAACGCTTTACGACTCACCAAGATGTAATCGACAAGCACACGACACCTATTGCACATGAAGTTTAGTGTGTGACGAGCACTGGAACTATTAGCGGTTTCCACAATCAAGTATATGTgcatgaactttaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0036268 swimming biological_process
GO:0030017 sarcomere cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371354 lncRNA upstream 83033 2789242 ~ 2789496 (+) True G313494
XR_004580285.1 lncRNA upstream 135941 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA upstream 137145 2735119 ~ 2735384 (+) True G313465
TU371292 lncRNA upstream 197883 2674433 ~ 2674646 (+) True G313443
TU370833 lncRNA upstream 749095 2116324 ~ 2123434 (+) True G313052
XR_003404407.2 lncRNA downstream 63772 2942487 ~ 2945207 (+) True LOC113543325
TU371493 lncRNA downstream 197334 3076049 ~ 3076370 (+) True G313607
TU371707 lncRNA downstream 420383 3299098 ~ 3299306 (+) True G313796
TU371743 lncRNA downstream 602385 3481100 ~ 3489299 (+) False LOC113543208
TU371775 lncRNA downstream 645594 3524309 ~ 3524518 (+) True G313853
XM_026941250.2 mRNA upstream 1273 2860285 ~ 2871256 (+) True hhatla
XM_026941205.2 mRNA upstream 37597 2808427 ~ 2834932 (+) True plcd1b
XM_026941204.2 mRNA upstream 37597 2817742 ~ 2834932 (+) False plcd1b
XM_026941137.2 mRNA upstream 144461 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA upstream 144461 2718759 ~ 2728068 (+) False ralab
XM_026940823.2 mRNA downstream 96931 2975646 ~ 2985302 (+) True bmi1b
XM_026940953.2 mRNA downstream 135771 3014486 ~ 3019463 (+) True nebl
XM_026941475.2 mRNA downstream 201301 3080016 ~ 3082751 (+) True nrn1b
XM_026941397.2 mRNA downstream 419629 3298344 ~ 3317951 (+) True sall3a
XM_026941285.2 mRNA downstream 544852 3423567 ~ 3489367 (+) False LOC113543208
TU371295 other upstream 196681 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 196681 2675322 ~ 2675848 (+) False G313445
XR_004580351.1 other upstream 210130 2655200 ~ 2662399 (+) False LOC117599997
trnat-agu_12 other downstream 10600 2889315 ~ 2889388 (+) True trnat-agu_12
trnas-aga_13 other downstream 746701 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 747245 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 749317 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 1068220 3946935 ~ 3947006 (+) True trnap-ugg_21

Expression Profile