RNA id: XM_026940984.2


Basic Information

Item Value
RNA id XM_026940984.2
length 6711
RNA type mRNA
GC content 0.50
exon number 57
gene id dock10
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5995489 ~ 6096462 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAAGTTCTACTTCTCTTCTCTATAACGCGTTTACTCCCAGTCTTAAGTCGTGGATGTGTTCATCGGCCGTGTCTTTCTACATCTTGTGTGTACGGAGCGCTTGTCAGGATGAGTTTTCGAAGTAAAATCACCTTTCGGAAGAAGATGAAAACAAGACGAGCCCGAGCGGATTTCAGCCGAATAAGCTGTCAGGAGAAGCCGAAGCTGATCGATCCTCTGGACTATGAGGCTGTGATTTCTGAACTAGAGCCAGAGCTTAAGGAGGACCCGCTACAAGACCTGCTGCTCTTCCCAGACCATGATTTCACTgtgtctACCCTTCCTCAGGAGAGACGAACGCAGCAATCCACTGTGCCAGAGGGGGCAGAGGAACAGGCTGAAAGTCTGCTGGTCAGACAGGCCTGCCAGTACTACAACTCCCAGCTGCATGTGGTCGAGTACACGTATCAGGAGTATGCAGGGGACTACCGCATGCTGCCCAGGAAATTGTATAAGGCTCAGAAATTGCCCACCCACTCATTCGAGATCGACCATGAAGACGTAGATAAGGATGAGGACACAACATCGCTGTCATCATCCAAAGGTGGAGGGACAGGTGGAGGCAGTGGAGGTGGAGGGACAGGTGTCTTTAAGTCTGGCTGGCTCTATAAAGGGAACTTCAACAGCACGGTCAACAACAGCATCACTGTTCGGTCGTTCAAGAGGAGGTATTTCCAACTGACACAACTAACTGACAACTCTTACATCATGAACTTCTACAAAGATGAGAAAATCTCAAAGGAGCCTAAAGGTTGCATATTCCTGGACTCGTGCACAGGGGTAGTTCAGAATAACCGATTGAGGAAGTACGCCTTTGAGCTGAAGATGAACGAGGTGACATACTTTGTGCTCGCAGCAGAGAGCGAGCAGGACATGGATGACTGGATCAACACATTAAATCGTATCCTCCAGATCAGCCCACCTGAGGGTCCGGCTATGGATCGTAAAAGCCAGGACCTGACAGACACCAGACACGATGTACTCGATCTGTCCTTGAATAATGGTTGTCTCACTGAAAATGAGGAAACGACGGAAAACGGAATCAATCCAGAATTAGCTAAGTACATCACTGAAACTGAAGAGATGGTGAGAGCAGCCAGACGAGAAGAGAGACTGAATTTGTTCTCCCTGGACCCTGATACTCCTGTTTTGAGGAGTCCACGGGGGGATTGTGGGGAGCCACCGCCCATCAAACCTTTCGAGGAGAAGCTGGGAAAGAGACTAATGATTTACTGCCGCTCTCTCAACCTCACACTGCAGGGCTGTGTGAATGAGGCGGAGACGGAGCCTGTCACTAATATCGAGCCTTTCTTTGTAACTGTGGCACTGCTGGACATGCGAGAGAACAGAAAGGTTTCGGCTGACTTCCACTTGGACCTCAACCATGAGATTGTACGGAAAATGCTCAGCGGCTCGGGGAGCCCCGGATCTCAGGGCACACCCGGAGGTCATGGCGGAGTGCAAGAGAATGGTCTGAAGTCCCCGACTGAGAAGAGAAGTGGCGATTGCCAGCTCAGTCAGGAACTGGAGAACTGGTTATGCTTCCCTAAACAGGCTATCTTCTCCATCACAAATCCTCATACGGATATCGTCCTGGTGGCCCGAGTAGAGAAAGTGCTTATGGGTAATATTGCAAGTGGGACAGAGCCCTACATTAAGAACACAGACAACAGCAAGACCGTTCAAAAGATGCTGAAATCCAACAAGCAGTTCTGTAGCAAGCTGGGGAAATACCGCATGCCTTTTGCATGGTCGGTAAGGTCAGTATTTAAGGATAACCAGGGCACGGTGGATCGGGAATCTCGGTTCTCTCCTCTCTTCAAACAGGAGAGCAACAAGATCTCCACCGAAGACCTGCTCAAGCTCATTACAGAGTACAGAAGGGCAGAGAAGACCAGTAAACTCCAGACCATTCCTGGCAGCCTAGAGATCAGTGTGGACTGTGTTCCAATGGAGCATCCCAACTCCGTGACATCATCATATGTTCCTGTGAAACCTTTTGATGACTGCAGTCTGCACGCTCCCACGGTGGAGGTCGACGAGTTCCTGCAAGATTCAGCCAAATTCGCTCAACCTTACAGAGTTTACAAGAACCACATTTACGTCTACCCCAAACACCTAAAATATGATAGCCAGAAAAGCTTTGCCAAGgcCCGGAATATCGCAGTGTATGTAGAGTTTCGAAACTCTGATGAAGAGCACGCCAAACCACTGAAGTGCATCTACGGAAAGCCGGGAGGTCCAGTTTTCACCACAGCTGCCTGCTCTACAGTTCTTCACCACTCGCAGAACCCAGACTTTTATGACGAGGTGAAGATTGAGCTGCCCACACAGCTCCATGAGAAACACCATCTCCTCTTCTCGTTTTTTCACGTGACGTGTGATATCAATGCAAAGACCAGCTCTAAGAAGAAAGAGGCTCTTGAAACTCCAGtggGCTATGCATGGCTGCCACTTTTGAAGGATGGCCGTCTGACATCTCAGGAGTTTAATGTGCCAGTCTCATGCACTCTACCCAGTGGGTACCTGCTTATTAAAGAGCCTTCATCCAATAAGAATGGATCAGATGTGAAATGGGTAGACGGAGGAAAGCCTATCTTCAAGGTGTCTACACTGGTGCTGTCCACAGTATACACTCAGGACCCCCACCTTAACCGGTTCTTCCAGCAGTGCCAAAAACGAGAGACAGATCTCTCACAACCACCTACCTCAAACTTTGTCAACTGCCTAAAGGGCCTCCTTAATATGGAGAGGAACCACGTAATTATTCGCTTCCTGCCCATCCTCTTTAACCAGCTGTTTAAAGTTCTCACCCAGAACGACTCAGATGAAGTCACCACTTCCACCACCAGGGTCCTAGTTCACATCCTTGCCAAGTGCCATGAAGAAAACCTGGCCCACTATTTGCACTCCTACATAAAGTTTGTGTTTAAGACTGAAGCACATGGATTCCGGACCGTGCATGAGGAGCTGGCAAAAGGCATGAACTCTGACCTGAAGACCAACGAGCAGTCGGCTGTGAAAAACATCCTCAAGTTTTCTTGGTTCTTTCTGGAAATCATAGTGAAGTCCATGGCCCAGCACCTGGTCGATTCAGAAAAGCTAAAAGTTCCTCGGTCACAACGGTTCCCAGGCACCTTCCTGAGCCACTTGGAGACTCTCATCATGACGATGTCAGATCACATCTTCTGGAAGTGCAAAGATCTGCCTGAGGAGACTCGCAGTGCCAGTCAAGCTGTTGCTGCCTTCGTAAAACGCTGCTTCACTCTAATGGACAGAGGTTTTACCTTCAAACTCATCAGCAACTACATCAACATGATCACAAACAGTGACAACAAGATGCTGTGCGAATTCAAGTTCGAGTTCCTGAGAGAAGTGTGCAACCACGAGCACTACATCCCTCTCAGCCTGCCCATCCCTTCTGCACGAATCACAGATAAGGCCTCGCCGGAAACGCAAAGTGCTCAGgTGGATATGCCAGAGTACAGCCTGACTGGGGAGTTCTGCAGGAAACATTTCCTGACAGGTCTGCTGCTGAGGGAACTCGGCTTGGCTCTCCAAGATGAGCAAGATATTAGGCACCTGGCTCTGGCCAGCCTGAAGAACCTGATGGCCAAGCACTCCCTGGATTCCCGTTACACCTTGAAGgagaaGCAGGCCAAGATCGCGTCTCTGTATCTGCCCCTGTATGGTCTAATCCTGGACAATATGCCACGCTTCTTCCTCAGAGACCTCTTCCCCATCTACCTGACCTCCAGTGAccagggTTCCAAAGATGACGTGAGTGTAGGAGGGGGAGGACTGCCGGGTCATAGTGGTCACAGCACTCGTCATGGAAACTCAGTAGATGCCGCCTTGTCCAAGGAGGTGCTCAACTCtattacagtgtTTTCATCACTTGCTGTATCAACGGCTAACAACACAGATTCACGAGGCTCGCTCATCAGCATTGAGTCCAACCCCAGCAATAGTGACCGCAACAGcgagaagatggatggatgtgaaAAGTTTGCCAGGCCGCAGTCCCTGATTGGTTATGGCTCACGCTTTGATAAACTGGACCAAGCAGAGACACGCAGTCTGCTTATGTGTTTCCTGCATATTATGAAAACCATATCAGAAGATGTAATGGTTGCATACTGGCAACGAGCCATTCACCAGGAGATTTCAGACTTCTTCAATATCTTAGAACTCTGTCTCCAGCACTTCAGGTTCTTGGGAAAGCGTCACATAGCCAGGAAGTTAGCAGCTGCGGTTAAGCTGGCGCAGGCCACGCAGAACACTGGCACTCTGAAGGGTTCGAATGCTTCCACCCAGTCCTCAGGGCTTCTTCCCCAATGGATGCTGTCAGGTCAGGATGGGCACAGACACGCTCGTTCCCACACCATGCCCATTCTTCGGGGCAAGAATGCCCTCACCAACCCCAAactgctgcagatgatggaACCAGatgggAATTCAGGTGATAATGACAACTTGAGCCCGACAGACATCGAAGCCAATCTGTCCACAGAAGTGTCCCTCACTGTACTCGATGTCCTGGGACTATTCGTGCAGCACCACAAGAAACAGCTACAGCAGGATGAAGGTCAGAACTCTCTAATGAAGAAAGTGTTCGACACTTACCTGCTCTTCTTCCAAATCAATCAGTCTACTACCACTCTTAAACACGTCTTTGCTGCATTGCGCCTCTTCATAcagaagttccCCTGTGTGTTTTTCCAGGGGAAGGCTGACCTGTGTGGCAGTCTGTGCTATGAGATTCTGAAATGCTGTAACCATCGCTCCAGTAGCACACAGACCGGGGCTGCTGCCCTTCTCTATTTCCTCATGAGGAAGAATTTTGAGTTCACCAAGGGCAAGTGTATCGTCCGTTCTCACCTCCAGGTCATTAAGGCTGTGAGTCAGCTGATTGCAGATGCAGCTTTAGGTGGCTCACGTTTCCAGCAGTCTCTGGCTATTATCAATAACTTCGCCAATGGCGATGCACCTCTTAAAAACACAACATTACCAGCTGAGGTGAAGGACTTGACGAAGCGAATCCGTACCGTCCTGATGGCCACGTCGCAAATGAAGGAGCATGAGAAGGACCCGGAGATGCTGGTAGACTTGCAGTACAGCCTTGCCAACTCGTATGCCAGCACCCCTGAGCTCCGGCGTACCTGGCTAGAAAGCATGGCCAAGATCCACGTCCGCAATGGAGACCTGTCTGAGgctgccATGTGCTACATCCATATCTCTGCCCTCATAGCAGAGTCACTGAAGAGGAGAGGTTACTGGAAGCCTGAAAAGGCACGGATCTCAAGCGTGGGCACAGAGGAGGCCAATGTAATTAACTGTTGCCCTTTACTAACCCCTCAAGAAGGAGAAACGTCATTCAGTATGGGCTGGCCTGCATTTATGAACATCACCCCCAACGTGCAGGAGGAAGGAGCCATGAAGGAGGACGCTGGCACCCAGGATACACCTTACACTGAGGATACACTGGTGGAGCAGCTCGAGCTGTGTGCGGATTATCTGTGGAAGTCTGAAAGGCATGAGCTCGTAGCAGATGTCAACAAGCCCGTCATCGCCGTCTTTGAGAAGAGACGAGATTTCAAGAGGCTGTCAGAACTGTACTATGACATTCATCGCTCATATCTGAAGGTGAACGAGGTTGTGAACTCAGAGAAGCGTCTGTTTGGCCGATACTACCGTGTGGCTTTCTACGGACAGGCAGTGGGATTCTTTGAAGAGGAGGAGAGTAAGGAGTTTATCTACAAAGAGCCGAAGCTCACAGGCCTTTCGGAGATTTCTCAAAGACTCCTCAAACTCTACTCTGACAAGTTTGGAGCAGACAATGTCAAAATGATCCAGGACTCCAATAAGGTGAACCCCAAAGACCTGGATCCTAGATTCGCCTACATTCAGGTCACATATGTGGTGCCGTACTTCGATGAGAAGGAGCAACAGGAAAAGAAGACCGATTTTGAGAGGAATCACAACATCAATCGCTTCGTCTTCGAGACGCCCTTTACTCTTTCTGGCAAGAAGCATGGCGACGTGGAGGAACAGTGCAAGAGGCGCACCATCCTGACCACGAGCTCCATGTTCCCGTACCTGAAGAAGCGGATCCAGGTGGTGAAGCAGCAGAGCACAGAGATGAACCCCATCGAGGTGGCCATTGATGAGATGAGCCGCAAAGTGTCTGAACTCAACCAGCTCTGCAAGATGGACGAGGTGGACATGATCCGGCTGCAGCTAAAGCTTCAGGGCAGTGTCAGTGTGAAGGTAAATGCAGGACCAATGGCCTACGCTCGGGCATTTTTAGAGgagaaaaatgcaaagaaatacCCAGACAACCAGGTCAAGTTGCTCAAAGAGATCTTCAGGCAGTTTGCGTACGCATGTGGTCAGGCTCTGGACGTGAACGAGCGGCTGATAAAGGAGGACCAGCTGGAGTACCAGGAGGAAATGAGAGCTCACTACAGAGACATGCTAAACGAGCTCTCGGCCATCATGAATGAACAGATCCCGCATGGAAGACAGTCAGTTATAGAACGACCCAATGCCTTCTGAGCTGCCATTCAGCATCCAggaagatgatttttttttaccccaagAACCTTGCCAGTGTTACTCTCAGTGTGAACCTTGAGGACGTTGAGAGGAAATAAACGAACTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373443 lncRNA upstream 141234 5900630 ~ 5901566 (+) False shox2
XR_004580354.1 lncRNA upstream 300446 5741742 ~ 5742354 (+) True LOC117599998
TU373059 lncRNA upstream 431037 5611559 ~ 5611763 (+) True G314969
TU373044 lncRNA upstream 454881 5587702 ~ 5587919 (+) True G314954
TU373013 lncRNA upstream 494608 5547889 ~ 5548192 (+) True G314923
TU373594 lncRNA downstream 80992 6177454 ~ 6178053 (+) True G315454
TU373735 lncRNA downstream 128297 6224759 ~ 6225767 (+) True G315579
TU373736 lncRNA downstream 129509 6225971 ~ 6226670 (+) True G315580
TU373740 lncRNA downstream 134114 6230576 ~ 6231579 (+) True G315584
TU373739 lncRNA downstream 136139 6232601 ~ 6234263 (+) True G315583
XM_026941320.2 mRNA upstream 141235 5894508 ~ 5901565 (+) True shox2
XM_026941322.2 mRNA upstream 141235 5894508 ~ 5901565 (+) False shox2
XM_026941314.2 mRNA upstream 259566 5782293 ~ 5783234 (+) True LOC113543227
XM_026941243.2 mRNA upstream 319001 5716306 ~ 5723799 (+) True lxn
XM_026941193.2 mRNA upstream 671903 5341009 ~ 5370897 (+) True si:dkeyp-97b10.3
XM_026941484.2 mRNA downstream 9540 6106002 ~ 6108369 (+) True LOC113543361
XM_026941237.2 mRNA downstream 28149 6124611 ~ 6138401 (+) True cul3b
XM_026940946.2 mRNA downstream 44123 6140585 ~ 6147090 (+) True LOC113543022
XM_026941443.2 mRNA downstream 120976 6217438 ~ 6224414 (+) True sbds
XM_026940835.2 mRNA downstream 167166 6263628 ~ 6266410 (+) True LOC113542971
TU373444 other upstream 145970 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 823182 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 951703 5088101 ~ 5091097 (+) False sptssb
TU372695 other upstream 1084680 4937048 ~ 4958120 (+) False LOC113543089
TU373737 other downstream 130255 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 840878 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1036997 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1599072 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 2166877 8263339 ~ 8264061 (+) True G316744

Expression Profile