RNA id: XM_026940995.2


Basic Information

Item Value
RNA id XM_026940995.2
length 1707
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC113543045
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4258365 ~ 4263286 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCCAGACTATTAACTGTCTTACATCACAGTAGAGGTTATAGCTGAACAAGTGACACACACGACACAGGGGCAGTTTTACATCCTCACATCCTAAGAGTGTCCCTAGGCTAGGCACCAGAACCAACacggataaagcacttactgcaAATAAgCTTAATGATGGCTTCAAATGGAACCCCAAATTTCTCTTTAGATTGTGGAATTAATCAAAAAGCATGGGAAGAAGCTCTTCCAGCTCtctatttcattattttcccaCCCGCTCTTCTGCTGAACCTTATAGTAGCTTGGATATGTTTACACATCCAGTCCAACTCTACTTTCATGGTGTACCTGAAGCACTTGGTGGCGGCTGACCTCCTCATGACTTTGACCTTCCCCATCCGAGGTGCCAGTGAAATCCCAGGAGCTTCCCCGGGGCTGCATGCTTTCGCCTGCCGATTCTCAAGTGTCTTCTTCTACCTAGCCATGAACATGAGTGTGATTTTGATGGGACTCATCAGCCTTGACCGCTACTTAAAGATTGTGAGATCTGGAGGTGGTGTTCTGTGTCAGAACCTACTTTTTAGTAATGTCTTATCATTCCTTTTCTGGATTGGGTTGATTGGCTCTAATTCATTACCAATTATTATCACATCAGACCAAGACCCTACGAATAAGACCGGAGAGTTCTGCATGGCCATGAAAAGTGAACTAGGACTTTCTTGGCACGAGGGAGTCGTCATCTGCGGCAAAGTGATTTTTTGGACAGTGTGCATTATAATTGTGGTTTGTTACACCTGCATTGCTAAGACGGTTTTGGAGTCATATCAAAGGTCTCGCGGCAACAACGACAAGCGGAAGCGTAAAGCAAAGCTCCGGGTTTTTCTAATTCTTCTCgtattttttatctgttacGTACCTTACCACTCTATCCGAATTCCTTATACTAAGCTACAGGTTCAAAGCAATGACACGTGTACCAAGCTTTCACTTAAAATTGGTAAGGACTTCACCCTCTGGCTCTCAGCTCTAAATGTGTGCCTGGACCCCCTGATCTACTTTTTTCTCTGCAGGGCTTTCAGGGAAAAGTTTTGGGAGAAGGTTGATCTTAAAAGATTTGGAAAAAACAATGATGCATGTCAGTCCTCGGATACTTCACTCTAAACTTAATGTAAAGAcagtgaatgtatttttttttttaacaattgcATTTTATAGAACGCACTGGTGATGTACAGCTTCAAGTACAGCTGtgttacattttgtaaataacTGCCATGGCATGACAGTGTGTAACGAATCATTGCAGAACACTGAGAGTAAAATGGTGTTGAAACCACATCAGGAAGCTAAAAGTTTGCACAGTTTCACACTGGAGACCAGAATATATCTTTCTATATCTTTCTTTGCATCAGggttttttataatataaacaagTCAGCAATTTTGCAGCTTTTTTGTAATGAATTCATGGTGTATTTttgataataatttttattgGACAAAAGGTCTAAAGGTCTAAGAGCTGGTCTGTAGTATGTTTGAAAAACTGACCAAAGAAAACCTGTTTAGAAACAAATATTGTAACATTTGTTAATATATTTGCTACAATATGAGCTCATATGCATTAATAAGCATgtaattgtgtttaatttagACAAATGCTTGTACTGCATTAAAAGCTATTGCACTTGTATTTGTAATGCATGAAGTGTAtctaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372207 lncRNA upstream 258051 3996502 ~ 4000314 (+) True G314222
XR_004580328.1 lncRNA upstream 362680 3888027 ~ 3895685 (+) True LOC117599982
TU371944 lncRNA upstream 412270 3845857 ~ 3846095 (+) True G313990
TU371896 lncRNA upstream 438456 3773070 ~ 3819909 (+) True G313949
TU372364 lncRNA downstream 26968 4290254 ~ 4293729 (+) True G314362
TU372366 lncRNA downstream 31579 4294865 ~ 4295074 (+) True G314364
TU372412 lncRNA downstream 116351 4379637 ~ 4384865 (+) True G314402
TU372416 lncRNA downstream 254315 4517601 ~ 4527820 (+) True G314404
TU372431 lncRNA downstream 425683 4688969 ~ 4762095 (+) False LOC113543063
XM_026941339.2 mRNA upstream 1531 4251870 ~ 4256834 (+) False p2ry12
XM_026941338.2 mRNA upstream 1531 4252748 ~ 4256834 (+) True p2ry12
XM_026941365.2 mRNA upstream 19659 4225498 ~ 4238706 (+) True igsf10
XM_034314876.1 mRNA upstream 74936 4174793 ~ 4183429 (+) True LOC113543359
XM_034314877.1 mRNA upstream 74936 4179986 ~ 4183429 (+) False LOC113543359
XM_026940971.2 mRNA downstream 3804 4267090 ~ 4276958 (+) False LOC113543038
XM_026940970.2 mRNA downstream 6779 4270065 ~ 4276958 (+) True LOC113543038
XM_026940925.2 mRNA downstream 19881 4283167 ~ 4290110 (+) False LOC113543011
XM_026940924.2 mRNA downstream 19884 4283170 ~ 4290110 (+) False LOC113543011
XM_026940926.2 mRNA downstream 21905 4285191 ~ 4290110 (+) True LOC113543011
trnap-ugg_21 other upstream 311359 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 630252 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 632335 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 632868 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1368977 2889315 ~ 2889388 (+) True trnat-agu_12
XR_004580320.1 other downstream 329154 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 673762 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 673762 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 673762 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 824815 5088101 ~ 5091097 (+) False sptssb

Expression Profile