RNA id: XM_026940999.2


Basic Information

Item Value
RNA id XM_026940999.2
length 2107
RNA type mRNA
GC content 0.42
exon number 7
gene id cahz
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1351263 ~ 1357482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCTATGAATTGATTCGGAGTGAGCGTCACTCCAGTGCATTCACTGATCCTGCCGGTTTGACCCAACCTCCCTCTCTGTGTGCCAAACCCTCTGATGTGGAGATTCATGTGAGACAGGTttcaaagtgtgtgtataaaagctGGAGGCTGAGCAGCTCCTCACACTGACTGACTCTCAGCATCCAGGCTGTGAGGAACCTCCAGAGAGGAAAACTTTCCAACTTGGACAAGAAAGAACCCAAAGGAAGCATGTCTCACCACTGGGGTTACGGCACTAATGATGGTCCTGCCAAATGGGCTGATCACTTCCCCATCGCTAACGGACCCCGGCAGTCTCCCATTAACATCGTCCCGAGCCAGGCCCAGTTCGACTCGTCTCTCAAGCCACTCAAGCTTCAGTACGACGCGTCTACATCCAAAGACATCCTGAACAATGGCCATTCATTCCAAGTGAACTTCCTGGACGAGAAGGACAACGCAAttctgaTCGGTGGGCCCATCACTGGCACCTACAGACTGAAGCAGTTCCACTGCCACTGGGGCGCGAGTGATGACAAAGGGTCTGAGCACACAGTCGATGGCGTCAGGTACCCCTGCGAGCTGCATCTGGTGCACTGGAACACCAAGTATGAGAACTTTAATGAGGCCGTGAGCAAACCTGATGGCTTGGCAGTTGTTGGAGTCTTTCTGAAGCTTGGTTCTGCCAATCCCCGACTGCAGAAAGTTCTGGATACCTTTGATGCCATCAAAGCAAAGGGTCAGCAAACCACATTTTTGAACTTTGACCCCAAGAACCTGTTGCCTGCCTCTCTGAATTTCTGGACTTATGAAGGTTCTCTCACCACACCACCTCTGTATGAGAGCGTCACCTGGATCGTCCTGAGAGAGCCGATTAGCGTGAGCTCTGCTCAGatgGCAAAATTCCGCAGTCTTTTGTTCAGCTCGGAGGGAGAGCAACCTTGCTGTATGTGCGATAACTACAGACCCCCTCAGCCTTTAAAAGGACGCAAAGTTCGCAGCAGCTTTAAGTAAACCGCAGAACGCACCTCTGACCCCGTACACTGAATGCATCTCAGCCAATCATAATGCTTCTTTTCCTCAGAATGTCCCTGTCGAACTCTGCAACTCAATTCttcattttgattcatttgaataACTGACTCATGTTAAACAAACTCTTTTGGGTTGGTTCAGATGATGCATATTGATTCTGCAGATTACACAAAATCTAAAAAGCTATGAATCAGTTggttcatttgtttaaattgaCTCATTTGTGCAAGCACAGATGATTTGGTTCAGCTGAACCAGTTGCCATATTTGAATTTTGTATAATACGAAAGAATATAAAATGCTATGAATTATTTGAACAATTTTGTTTTAGTTGGTCAAGATGAATCAGTTGGTTCATTTGAATTCTGAAATTGTACAAAGTATAAAGATGTGTGAATCAATGAGTTTAAATCTCAGATCAAATTAGCCAACTTTGAAAAGCTCGTTGAAAAATTCggcaactgaactgaaattaACCACTCATCATTTGGTTCATctaaattttaagaaaaaaaaaaccccaaaaaacaacagaagagaaAATGCTATGAGTCAGCTGGTTAATCTATTCAAATGAATCGACTCCCAATCTGTTTCAAGCGGTTACATGTAAAACTAATGACCTTATTGTattcattattaacattttactttttaattgtaaaatgttaagcTGTGTAGACCTTCCACATGCTAGGAAAGAGATAGTAATACTCACTATCCCCATTAGTTTAAGCTTCACCTTACTCCTGATGTTAGATTATCTACTGGATGTTTAGTATTTATGTGGTTTAGGTTGAGATATGTGAAATGTTCAGGGTGCAGAGCGCAGCAAAGAAGAAATCCCCTAGTGAAGCACTTCTAAAGTATATGGCTTCATGAAATTCACTTAAAGAAGCAGCTGTAGAGATCTAGAGAAACTATAAAAGACTTAACAAGTTTTGCTAAGATAAAAATTATTGCTTATtgctaaaataaaagaatgtcTATTTGTCTGTTTTACGAAAGGGTTGAATACTCTTAcgaataataaattaatatatttaaacatta

Function

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0015670 carbon dioxide transport biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K18245 CA2; carbonic anhydrase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580295.1 lncRNA upstream 246939 1089858 ~ 1104324 (+) True LOC117599954
XR_004580327.1 lncRNA upstream 371212 976621 ~ 980051 (+) True LOC117599981
TU370266 lncRNA upstream 444817 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 465149 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 475383 875663 ~ 875880 (+) True G312531
XR_004580318.1 lncRNA downstream 5894 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 6754 1364236 ~ 1368869 (+) False LOC117599969
TU370650 lncRNA downstream 164819 1522301 ~ 1522511 (+) True G312877
XR_004580341.1 lncRNA downstream 267081 1624563 ~ 1662193 (+) False LOC113543035
XR_004580340.1 lncRNA downstream 267081 1624563 ~ 1640641 (+) False LOC113543035
XM_034314536.1 mRNA upstream 203887 1128909 ~ 1147376 (+) True paxip1
XM_026940830.2 mRNA upstream 284796 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA upstream 284796 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA upstream 284796 1053895 ~ 1066467 (+) False cnpy1
XM_026940831.2 mRNA upstream 284796 1054144 ~ 1066467 (+) False cnpy1
XM_034314849.1 mRNA downstream 530268 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA downstream 544819 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 608258 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 625834 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 638129 1995611 ~ 2018166 (+) False zgc:163121
TU370328 other upstream 215243 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 219580 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 512741 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1038535 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 1158029 189539 ~ 193234 (+) True pnrc2
XR_003404390.2 other downstream 608258 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 775732 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 824497 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 1136750 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 1297718 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile