RNA id: XM_026941059.2


Basic Information

Item Value
RNA id XM_026941059.2
length 3494
RNA type mRNA
GC content 0.41
exon number 13
gene id lyn
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2147275 ~ 2168213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAAAACACAGCGCGCGCTGCAGTTCCTCTTTATCGCTCCGGTGCGGCTCAATGAGGCGCAGCTCCCAAAACCCAGACCCGCCTTTTACTGCGCTGGACCTCTCAAACTACACACCTCACAGAAATCATGGGTTGTAAAAAATCCAAGCTTGGCGATGAGCAGAGTGGAGGTGCGCTTGGTGTGAAGAAGCGTGAGCCTGTACATCCTGAAAAAACGGTATATGTGAGAGATCCAACCTCCCCTAAACCCCATACTATAAATAATGCTCCTCCATCAGGACTCCTACCTGGGCAGAGATTCCAACAAATGGAAGAGCAACAGGAACATGGCAAAATAGTCGTTGCTCTGTACCCGTACGACGCGATCCATCAAGACGATCTGGGATTTAAGAAGGGGGAGAAGCTGAAGGTTCTTGAAGAGCATGGCGAATGGTGGAAGGCAAAATCTCTGAGCACAAGGAAAGAAGGTTTCATCCCCTCCAATTACGTCGCCCAGGTCGACACCATGGAGACAGAGGAATGGTTCTTCAAAGATATCACAAGAAAAGATGCAGAGAGACAACTGCTAGCACCCGCTAACAAACCCGGTTCCTACCTCATCCGAGAGAGCGAGACATCCAAAGGAAGCTACTCGCTGTCCATCCGAGATGTGGGTCCTCAGGGTTCAGACGttgtaaaacattacaaaatccGGAGTCTGGACAACGGTGGCTACTACATTTCTCCCAAAATCACATTCCCAGATATTGTGAAAATGATCCATCATTACCACAAGCAATCAGATGGGCTGTGTCGTAAACTCGAGAGGCCATGTGAAAAGCCAAAAGCCCAGAAACCATGGGATAAAGATGCATGGGAGATCTCAAAAGAGTCCATCAAGATGGTGAAGAAGCTCGGGGCGGGGCAGTTCGGAGAGGTGTGGATGGCGTATTACAACAACAGCACGAAGGTGGCGGTGAAGACGCTGAAGCCAGGCACCATGTCAGTCGAGGCTTTCCTGGAGGAAGCGAACCTGATGAAGACGCTTCAGCACGACCGACTCGTTCGCCTGTACGCCGTCGTCACCAAATCCGAGCCCATCTACATCATCACTGAGTTCATGGCTAATGGCAGCTTGTTGGATTTCTTGAAAAGCAGCGCCGGCTCCAATTTACAACTTCCCAAACTGATCGATTTCTCTgctcagATAGCAGAAGGCATGGCCTACATCGAGAAGAAGAATTACATCCACCGAGACCTGAGAGCCGCCAACGTGCTGGTGTCTGAGAGCCTGCTGTGTAAGATCGCAGACTTCGGCTTGGCCAGAATCATCGAGGACGACCAGTACACAGccagagaagGAGCAAAGTTCCCCATCAAATGGACTGCACCAGAGGCTATAAATTACGGTTCCTTCACCATCAAGTCTGACATGTGGTCCTTTGGGATTCTCATTTATGAAATAATCACGTACGGGAAAATCCCTTATCCAGGAATGAGCAACAGTGAGGTCATGTCCTCCGTGCAGCGTGGCTACCGCATGCCCCGGCCTGAAAACTGTCCCACCGAACTGTACGACATTATGAACACCTGCTGGAAAAATAAACCTGAAGACCGACCCACCTTCGACTACATGCAGAGCGTCCTGGATGACTTCTACACGGCCACTGAGGGCCAGTACCAGCAGCAGCCATGAGCCACATTCCTGTGCTTCCCTTGCACGCCGCTGCACCCACATTATTTATACTTAGCAGAAGAACAGCGATGCATTGGGAAGAAatcatgtatatatgtaaataggaataatattttttgcatcTACCAGCTTGCTTACATTTAAGCAAGATCAAAACAGTTTCTTCAAATTGAAGTATTATCTGCTTGCttgtaaaatgataaaaatataaaaatgctacTTGTGATTTTACATGAAattttcctctcatttttaGTGACGACTGTTATAATCATAATCCTACTGTTAAAGAAGACTGAACTACATAGAGCTATGATAACGATGAGTTTATAATTCAGCACATTCAGAGAGCAAAATTCCAGgacataattaatataaatgcaaaaatatagaGTGGCTGCAATTTCTGATATCTCCAGTGAGCAAAAATCCAGCATTGTTTCATTAGCCTGTATTATAATTGCAACTAATTTATAGAATCCATAACcattaattttctctaaagCTCTTAATGTCTTTGCATATACGgtccatttcttcttcttcttcttctaattcTTTTTCGCAGTTGTAGGCAATACCATTACTCTTGCAACGTTATTTAATCAAAATTCTTTGATGTAAAACTTTTTTCAACATCTGAACTTTGATATTTGACACTTGCATTTGTTAATTACTGTAAATCCAACAAAAAAGCCTGTCCAAACAGAGCAGAAGTAGCACCGAAACATGTGACTTATgccatcatttatttatctgaaaaaccCATTCTGAATGGTCAAAATATCTTCATCcaatttaaagcaaaaaaaagagccaaaagagTTAAATCTGCTTGGTTAGAGGAGTCCAACGAtatgacacactgcaaaaagaCCGAATTCCCAACACTACCTACTACAAAATCACATTCCAATACTGTATTTAACTTGCTCTTGAGGACTTCCTCTTGCCGCTTCCCACTAAAGGGATGATTCagtaatattaatttcttgttaaGTGTAGTTTTATAAATGAAGGCAGACAGATTGAGTCAAATATCATCTGAGGAGTAAAATTTAACCAGAAGAAGACAATGTGATTTGATGCAATTTCCTTTTCAAAACAATAGTTTGTgagctatttgtttttttaccaTGGTTTGTAAATGTtagataaaaatatttaaaatatataacatttacagcAGGGGCCATGATTTAACCCTGAGCTGCAGTTTCTCatgaagaatgttttttttttagtggaacttgtgattttttttatttatcaatgtTTTATAAGGCATAATCTGCCATGACAGACATCACAATACTGCACTGAGGTGATTTTTGATAACTCTTGGGATGCTCATGGTCAAACATTAAAGGTTTAGAGGctggagcgtgtgtgtgagcctgCTTACATGGCTTACTCTAACCAAGAGCATCAAGTtctgtattcattttaatgttgtgttaatACAGGTCATGGAAAAGTGAATAGTGTATAGTATGAAGTACATGATGCACTGAGGTTTGAGTAGGAACACAGGAACACATGGttctgcaaaataataaaaaaaaaaaagtataaaaaaaatcattttaagggAGACTGATGCTGAAACTGTTCTGaatgctgaaatattttaagTTAATGCAGGTCctgtgttgctgttgttgttattcaGTTGTAATTAAATCTACTTGTCTGTCAATCTTAAATATTGTTTGTAAGATTGTTTGCTGTACATAAATTCACTGTGTAGAAATATTATACCTGCTGTTTTGATATCAATGtgctgtacattttttaataaactgattaaacttTGAA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0090022 regulation of neutrophil chemotaxis biological_process
GO:0009611 response to wounding biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05854 LYN; tyrosine-protein kinase Lyn

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 23841 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 170560 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 252328 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 506549 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 510552 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 506220 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 563002 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 566906 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 621029 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 774274 2942487 ~ 2945207 (+) True LOC113543325
XM_026941306.2 mRNA upstream 2038 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA upstream 2038 2133213 ~ 2145237 (+) True tgs1
XM_026941278.2 mRNA upstream 31095 2069361 ~ 2116180 (+) True xkr4
XM_026941293.2 mRNA upstream 87258 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA upstream 87258 2043248 ~ 2060017 (+) True LOC113543213
XM_026941061.2 mRNA downstream 835 2169048 ~ 2176365 (+) True urod
XM_026940816.2 mRNA downstream 100234 2268447 ~ 2274946 (+) True toe1
XM_026941102.2 mRNA downstream 129913 2298126 ~ 2318867 (+) False tmx3a
XM_034314711.1 mRNA downstream 129925 2298138 ~ 2318867 (+) False tmx3a
XM_026941100.2 mRNA downstream 137556 2305769 ~ 2318867 (+) True tmx3a
XR_003404395.2 other upstream 3962 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 169966 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1011255 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1015592 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1308753 820555 ~ 838522 (+) False jph1b
TU370902 other downstream 13766 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 326019 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 486987 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 486987 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 486987 2655200 ~ 2661421 (+) False LOC117599997

Expression Profile