RNA id: XM_034314662.1


Basic Information

Item Value
RNA id XM_034314662.1
length 2222
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC113543080
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6384010 ~ 6399285 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTAGCACGCAGTCAGCTAGGGTTGAATTCCAAATACCTCCACACTCCCTGTATTAGTTCACTTCATAGCCTGGATATATGTGTTCATGAACTCAAGTTTCCTGGCTCTACCATGGAGAAGTATGAGAAGCTGGCTAAGATTGGCGAAGGCTCCTATGGAGTGGTGTTTAAATGCCgaaacaaggaaacaggccagATAGTGGCCATCAAGAAGTTTGTAGAATCCGAGGACGACCCAGTCATCAAGAAGATAGCACTGAGGGAAATCAGAATGCTGAAGCAGTTAAAGCATGTAAACCTGGTCAACCTTCTGGAGGTGTTCAGGAGGAAGAGAAGACTTCACTTGGTCTTTGAGTTTTGCGAACAAACCGTCCTCAATGAACTCGACAAGCACCCCAGAGGGGTTCCTGAGATCCAGCTGAAGAGCATCGTCTGGCAAACTCTTCAGGCTGTCAACTTCTGCCACAAACATAACTGTATCCATCGCGATGTGAAACCAGAAAACATCCTCCTAACCAAGACGGGCGTCATTAAGCTGTGCGACTTTGGGTTTGCCCGCATCCTGActgGCCCGGGTGACGACTACACTGACTATGTGGCCACACGCTGGTACCGAGCACCGGAGCTGCTGGTGGGAGACACACAGTACGGCCCGCCGGTGGACGTGTGGGCTCTGGGCTGCGTCTTTGCTGAACTCCTTCTCGGGAGTCCACTGTGGCCTGGACGCTCAGATGTAGATCAGCTCTACCTCATCCGCAAGACGCTGGGTGACCTGATCCCTCGACACCAGCAGGTGTTCCGCTCCAATGCTTTCTTCAGTGGAGTCAGCATCCCTGAACCAGATACCATGGAGCCACTTGAGAAGAAGTTCCACGTTGCCTCTCCTCATGCCATTACTGTGATGAAGTCCTGTCTTGTGATGGACCCTCCTGAAAGACTGACATGTGAGGAGTTATTAGAGCTGCCATACTTCCAGGATGAGGGTGGATTCGGCTGGGGACGAGAAAGCGATCGACCCATGAGGCGCCATGAGAAAGGTGCCAGGCGCAGAGTGCCAGGGGCCCAGTATTTGCCTCAACTTACCAGCAGCACCATCTCCCCGGCACCTGAGCTGAAGAACAAACACAAGCCCAAGTATGACCACCATCTTCCCAACATCTAACcctgaaagagaaataaaaatgaggcACGGGGATGTTACAGGGATGTTATGGACTTGAATTTACAATACACCAGTGAAATCTATATACAAATTGTAGTTATGAGGAACATTGCGAGAAGTGGCACTGCCATAAAGTTTGACGTGGATTtactttaaaatcattttaaactctTGATATACTGTTCGAACATTAAATGAATGTGATTTAGTCAGTATATACTCTCACCTCCAACAATACTGTACATCAGCACCTTAGCAGATTGCCTTAGTTGAAATATTACTCCCCAACATGGATTGTAGCTCATCTAGGTGTCTTTACTAGTCCTAGCTTTTTCACCGTTGTGCCAAATTTATCAGGGAGTAGCGCATTTTGATCCAAAAggtcatattcatcttttctaATGCTTGCATTGCTCTCAGACAGCATTAATTCAAAGCACTTAAATCCAGTTTAAGAATCCACAGCTTGAATTTGAAATGTTGCTCTTATCTGGGACTTCATAGCCTTTTTATACCTTTATGTGTAACTCTTtctataatttcatttattagtttttCAACATCTGTCATTTTGTCACTTGTGCATGCCATTCACAGGGTTGTGTGTTGCACTAATACAAACTGTTCATCACATGTAGTGAGAAGTCTCTCTAAAACTCTTTTCCTTGCAGTTAATACAAATCAACAGAACCCCAGTGTGATATGTAATGTGATCCACAGACTTGAGCTATTTAGCTCTTTGTTAGTGGGAAGAtctcatttattaaatactGACAGGCTGAATAAATTtcattgtgtatatatacacctcTTGTTAACAATGAAATACAAGTTGTTGTtattcttctttcggctgctccttttaggggtcgccacagcggatcatcgGTCCTCATATTTGAtttagcacagtttttatgccggatgcccttcctgacgcgaCACTCCCACATTTTATCAGGTCTTGGGACccgcactgggagtgcactgtcttgtgtaACCCCAGTGACTGAGGTTGATTCCCTGGCTGGGACTCGAACCCCGGCCATGGCGGTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373749 lncRNA upstream 131357 6251434 ~ 6252669 (+) True G315591
TU373751 lncRNA upstream 131357 6251471 ~ 6252669 (+) False G315591
TU373750 lncRNA upstream 131404 6251434 ~ 6252622 (+) False G315591
TU373748 lncRNA upstream 131404 6251471 ~ 6252622 (+) False G315591
TU373739 lncRNA upstream 149763 6232601 ~ 6234263 (+) True G315583
TU373835 lncRNA downstream 455 6399740 ~ 6399979 (+) True G315647
TU373836 lncRNA downstream 4117 6403402 ~ 6403601 (+) True G315648
TU373838 lncRNA downstream 6837 6406122 ~ 6407755 (+) True G315650
TU373863 lncRNA downstream 76404 6475689 ~ 6475893 (+) True G315665
TU373858 lncRNA downstream 106655 6505940 ~ 6506686 (+) True G315660
XM_034314542.1 mRNA upstream 107916 6274739 ~ 6276110 (+) True LOC113543329
XM_026941336.2 mRNA upstream 116152 6266493 ~ 6267874 (+) True LOC113543241
XM_026940835.2 mRNA upstream 117616 6263628 ~ 6266410 (+) True LOC113542971
XM_026941443.2 mRNA upstream 159612 6217438 ~ 6224414 (+) True sbds
XM_026940946.2 mRNA upstream 236936 6140585 ~ 6147090 (+) True LOC113543022
XM_026941090.2 mRNA downstream 34981 6434266 ~ 6470111 (+) True LOC113543083
XM_026941279.2 mRNA downstream 496961 6896246 ~ 6904082 (+) True LOC113543204
XM_034314796.1 mRNA downstream 538055 6937340 ~ 6942819 (+) False LOC113543138
XM_034314797.1 mRNA downstream 538057 6937342 ~ 6942819 (+) True LOC113543138
XM_026941194.2 mRNA downstream 538058 6937343 ~ 6944990 (+) False LOC113543138
TU373737 other upstream 156786 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 487196 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1164408 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1292929 5088101 ~ 5091097 (+) False sptssb
TU372696 other upstream 1425906 4937048 ~ 4958120 (+) False LOC113543089
XR_004580329.1 other downstream 538055 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 734174 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1296249 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1864054 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1869424 8268709 ~ 8269198 (+) True G316745

Expression Profile