RNA id: XM_026941100.2


Basic Information

Item Value
RNA id XM_026941100.2
length 2310
RNA type mRNA
GC content 0.42
exon number 16
gene id tmx3a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2298126 ~ 2318867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaaaaaaaattgataatgattaaaaatatctcCAATCATTAATGAAGGAACTATTATGACCAATCTGTTAAATGTTAGTTCACAGCAACTCCGATCAGGACAAAGCaattattaaagattaaagatgcAAGAAGCTGCATATAAATGCAGAGGAATAGGAACCTCAGAGGAACCTCACACAGAAGGTTGTGGGAGACGGTACTGCTCGTTCTCACAAGCTGgattaacatttacaaacatttacaaacatttacactctGTTAGGTACATGGATGGTGGTTTGTAAGAACAAAATTGCACTCAGAAACAGAACCATGTAGACAAACTGAGGCAGACTGTGTCAGGTTCAGATGTGTACAGCAGCTAGAGAAGAaaatggatacacacacacacacacacacacacattttcagcaGCCCGTGTGAAGAGGAAAAGAGGGTTGCAGCTAGGCTTCATCCTTAAAGTCAGTCCCTAATCCCCCGGTCTAATCTGGTCACTGGGTCACTAGAGTGCTGCCTAATAATCATTCCATGTCTCTGTCCTTCTTCTACACACTCTCTatttcatcatcaaacacaATCATGGCAACCTCAAGACACTTCATCTGCTCAGTGCTTGTAGTGAGCATAAGCCTCGCGGCAGCGTATGTTGAAGAACTGGACGACAGatttaatgagATGCGTAGGAGTGAGCCCTGGCTGGTGGAATTTTATGCTCCGTGGTGTGAATATTGTAAAACATTTGAGCCGATATGGTACGATGTTGCAGCCGAGCTGAAGAGTCAGGGCTCTCACATCAATGTGGGCAAACTTGACACCACTGTCTACACCGatgCTGTCACAGAGTTAAAAATTCGTGGATATCCATCTATAATTTTTATAAAAGGAGATAAGTATTTTCACTACAACGGCCAGAAGACAAAAGATGCCATCCTTGAATTCACCTACAGAGTTTCTGGTCCCTCTGTGCGAGCTCTGACCAGCGTACAGCTCTTCCAGCACGTCCTGAGTCGCCATCAGCTTTTCTTTGTTTACGTCGGAGGGAGGTCACCGCTTAAGGGACAGTTTTATAAAGTGGCATCTGAATTTCTCATCCACAACTATTTTTTCTCAGCCACCGTGGACGTTTTACCGCAGGCAGTCACATTGCAAGACGTTCCCTCTGTCGTGGTGTTCAAAGACGGAGCTTATGACATCTACAACGAGGTACGCGACGGCAATCTTTCCTCCTGGGTGGACCGAGAGCGTTTTCCTCGTTATTTCCTGATGGACAGCTTCTCCTTGTACCAGATGGGTGAACGAACTAAActtgtagctgtagctgtggtGGATGAGAAAAACCCATCTGCAGAAAGTAGTCGTTATAAGAGCCTTGTGGAAAAGGTGGCCACAGAATACAGCGACCAGTACAGCATGAACTTCCAGTTTGGCTACGTGGATGGAAACGACTACATCAATGGCGTCATAATGGGCGAGTTGCCAGTGCCTTCTCTGATTGTGATGAACATGTCCATTGATGGATATTATCTACCTGGATATACGGTTGAGACCATTGAAGATCTTCTCCAGTTCCTCAATAGCATCCTGACTGGAAGATCTGAGTTACTCGGAGGGAACGGATTCCTGCGGCGGATAAAGAGACTTTATTATCGTGCAACATCTGCTTTAAAGACGAGTTTCGCATCAGCTCCCTTCGGTACatgttttcttatttccttGCCGTTGGTCGTGATTGGATTCATCGTCATGGGAATCTGCACGGCTGAGAGGGTGGATGATGAAAAGGCAGATGATGGCACTCGTTCTGCGGTCACTCACAGGAAGAAAGCAGCAGTGAAACACTCTGAAGCCAAGAAAAAAGATTAACGTGACCACAATCATTACAGTGGTTCCCAGCCCTGGTACTCGACTGCCATTACTAtgaacattttactgttttctctgctctaacacacacacacacacacacacatatacactgacTCAGCAAAGGGCTGTTAGTTAGACAAATTAGTTTAATTAACTGTGTTAAAGCAAATAACTCAGTGAAATAGGCAACATGGTTGTTGGTATTATGATgttaaaattcattaataatttatggAAACTCAAATGttcaaattataataataaaaactcacgtaattaattatttgtaatttgtaatgcaTTTTGTAACACTGTTCTGACTAACAGCACAAATGCTGGGGTTGTCAGGGAAGTATCATGTTTAATCATCATGTGTAAGGAAGTAAGgaataagaaaggaataaaacacactgagtcATGATgatataggaaaacaatcaa

Function

GO:

id name namespace
GO:0001654 eye development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 182335 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 329054 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 410822 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 665043 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 669046 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 355566 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 412348 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 416252 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 470375 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 623620 2942487 ~ 2945207 (+) True LOC113543325
XM_026940816.2 mRNA upstream 30823 2268447 ~ 2274946 (+) True toe1
XM_026941061.2 mRNA upstream 129404 2169048 ~ 2176365 (+) True urod
XM_026941059.2 mRNA upstream 137556 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA upstream 137556 2147275 ~ 2168213 (+) False lyn
XM_026941305.2 mRNA upstream 160532 2133213 ~ 2145237 (+) True tgs1
XM_026941358.2 mRNA downstream 1007 2319874 ~ 2325480 (+) True dsela
XM_034297694.1 mRNA downstream 326664 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_034314885.1 mRNA downstream 336333 2655200 ~ 2661421 (+) False LOC117599997
XM_026940928.2 mRNA downstream 395572 2714439 ~ 2717698 (+) True c21h7orf25
XM_026941137.2 mRNA downstream 399892 2718759 ~ 2728068 (+) True ralab
TU370902 other upstream 120092 2181979 ~ 2185677 (+) True G313112
XR_003404395.2 other upstream 162456 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 328460 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1169749 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1174086 1128925 ~ 1131683 (+) False paxip1
trnae-cuc_41 other downstream 175365 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 336333 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 336333 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 336333 2655200 ~ 2661421 (+) False LOC117599997
XR_004580353.1 other downstream 336333 2655200 ~ 2660562 (+) False LOC117599997

Expression Profile