RNA id: XM_026941172.2


Basic Information

Item Value
RNA id XM_026941172.2
length 3073
RNA type mRNA
GC content 0.49
exon number 23
gene id cux1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4376994 ~ 4533974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCGTGGCACCGTTCAATACAGAGTCAGGTTCGCTGTTCGATCAACTCCATTCCGCGCCGCTGTTCGATAAGCGAAGGCCAAGTTCGATTACTCCGCTCCGGGTTTTACGCGCTTCCCgctctgttttttcccccctctcgcGAACTCCGGCCCCTCGCGCTCTCTCTATCAGCCTCTCACTCCGTCTCAATATGTCTCAAGATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAACTGCAGAGAGAACTAGACACCACTGCCACACTACTGGCCAACAGACAAGATGAGAGCGAACAGTCCAGGAAAAAGCTCATCGACCAGAGCCGCGAATTtaagaaaaacacaccagaGGATCTGCGCAAGCAGGTAGCTCCGCTGCTGAAGAGTTTTCAGGCCGAGatTGATGCATTGAGTAAAAGAAGTAAAGAAGCAGAGGCTGCCTTCTTGAACGTCTATAAGAAACTGATCGATGTcccagATCCCGTCCCCGTGTTGGAGCTCGGCCAGCAGCTGCAGCTGAAGGTACAGCGGATGCACGACATTGAGACGGAGAACCAGAAACTGCGTGAGACGCTGGAGGACTACAACAAAGAGTTCGCCGAGGTCAAGAACCAGGAGGTCACTATCAAAGCACTTAAAGAGAAGATCCGGGAATATGAACAGACCCTGAAGAACCAGGCGGAGAACCTGGCGCAGGAGAAAGAGCAGCAGCTCCACAACGACtatgcagagaaagagagGAAATTGCAAGAGTCGCATGAATCAATGGCCTCCAGGTTGGAAGAGGCAGAACACAAAGCTCAGAATCTACAGACAGCACTTGAAACCACTCAGGCAGAGCTGTTCGACCTGAAGACCAAGTACGATGAGGAGTCCACGGCAAAGGCCGATGAGATCGAGATGGTCATGACCGATCTGGAGCGAGCCAATCAGAGAGCGGAGACAGCCGAGCGAGAGGCTGAGTCACTGAGGGAGCAGCTCACGTCGGCTAACAAGTCCCTGCAGCTGGCCACACAGATCCAGAAAGCTCCAGATATGgagcaggCGGTGGAGGTGGTGTCGCGCTCGAGTCTGGAGGCCGAGTTGAGCGCTAAGGAGCGGGAGATGGTGCAGCTGGTGGAGGACGTGCAGAGACTGCAGGCCAGTCTGGCCAAACTGCGCGAGAACTCCTCCACCCAAATCAGCCAGCTAGAGCAGCAACTCAGTGCCAAGAGCGCCACACTCAAGCAACTGGAGGAGAAGTTGCAGGAGCAGGCTGACTACGAGGAGGTGAAGAAAGAGCTGAGTATCCTGAAGTCCATGGAGTTTGGGCCGTCTGACAGTGCTACAGCACAGGACTCATCTAAGCCGCTGGAGGTGTTACTGCTGGAGAAGAACCGCAGTCTTCAGTCTGAGAGCGCTTCACTCCGCATCGCCAACACCGAGCTGAGCGGACGCTACACTGCACTTCAGGTGGAGTTTTCAGCCGCAGTGAAGACCAGCGCTGAGCAGAAGGAGCTCATCTTCAAACTGGAGCATGACCTGAGCACCATCCAGGCCATGTCCTCCCTGTCACGCCCCGACGCTGAGGGGGCGGACCTGAGCGGCATGGACCGAATCCCTGAGCCTATTAAAGAGGCCACGGCTCTGttcacaggAGTGGTTGGCTCTTCTCAGGCTGAGCTTCCTCAGGGTCAGATGGACTCTCTGCTGTCCATCATCtccagccagagagagagattccgGGCTCGCAACCAGGAACTGGAGACTGAGAGTCGTTCTCTGCAGCAGACTCTGCAGGCCCTGCAGTCAGAGCTGGACAGTCTACGCGCTGACAACATCAAACTGTATGAGAAGATCAAGTTCCTGCAGAGTTACCCAACCAGAagcggAGGAACTGATGACACTGTGATGCGCTACTCTTCACAGTACGAGGAGAGGCTTGACCCCTTTGCCTCCTTCAGCAAGAAGGAGCGCCAGAGACGATACCTGAGCCTCAGCCCATGGGACAAGGCCACCCTCAGCTTGGGTCGTGTCATCCTGTCCAACAAGACGGCCAGAACTATTGCTTTCTTCTACACTCTCTTCCTCCACTGCCTGGTGTTTCTGGTACTCTATAAAACAGCCTGGAGTGAGAGCATTGGCCGTGACTGTGCTGCATACTGTGCTAAGAAGTACTCGGACCACCTGCATCGTTTCCATGAGAACGGTGACAATGCCGATATGTGGCAGTGAAACAGCGCTACAGTGAAAGCTGACGGTCTTCATGGTTTCTCTACTCTTTCGCTcaaatatataagaatataactTAGAATTAGTGCTGTGTATCctaaaaacatgttattcagACACAACCCAGTGCAAACGCTTTAATATCTAGAATTGGATTGTCGCTTTGGATTTCTGAACGAAGCCTGATTgcagccactagagggcgcaCTTGGTTTGTTAGCATctagattatatacagtataaatcagTGTGAAGGAGCATTTCTGTGCATGCTAGCTGAGTCATAAATCTAAATCAAAGAAAATATCTATAATTCTGCTTTGCTTTACAGTGGGGACCAGTTTATGTCTGAAttattctttcttccttttcttctttagGAACATGAAATGAATAGGTGATGAAATGAGATGGTTTAAATTTAGTCGAAtccatatatattattttatctttaaaacatttagcaATATTATAtgcttccatttttttcctattcCTTTGAATCCgaaatcatttaaatcattaacaGGGTTATGGGTTTACTACAGTATGATATTGATTTAAATTCTATGCAGAAGCCTAATTAgtagaaattaataaatatattcaagTTGTGGAAAGTTAAATCTAGGATtaactgtgttgtgttgttacagATCGAGGAAAGCTTGCTAGCTGTAGATCATCTGCTCTTGTGTTTTGTTCAACACAATACATCATGTTATGATCTAAAGTGTGTAATACAGCTGTGAGCATCCTCCATTTCCTGTTAGTGCTATGTTTGATTGGCATGtctctgttttgctttttctcttattaaaacTGTCGAGCATCTA

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09313 CUTL; homeobox protein cut-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372366 lncRNA upstream 81920 4294865 ~ 4295074 (+) True G314364
TU372364 lncRNA upstream 83265 4290254 ~ 4293729 (+) True G314362
TU372207 lncRNA upstream 376680 3996502 ~ 4000314 (+) True G314222
XR_004580328.1 lncRNA upstream 481309 3888027 ~ 3895685 (+) True LOC117599982
TU371944 lncRNA upstream 530899 3845857 ~ 3846095 (+) True G313990
TU372431 lncRNA downstream 154995 4688969 ~ 4762095 (+) False LOC113543063
TU372650 lncRNA downstream 245964 4779938 ~ 4780145 (+) True G314609
TU372656 lncRNA downstream 254126 4788100 ~ 4788414 (+) False pou3f2b
TU372673 lncRNA downstream 266678 4800652 ~ 4801103 (+) True G314628
TU372681 lncRNA downstream 312218 4846192 ~ 4846717 (+) True G314636
XM_026941425.2 mRNA upstream 26450 4315743 ~ 4350544 (+) False LOC113543315
XM_026941423.2 mRNA upstream 26450 4315745 ~ 4350544 (+) True LOC113543315
XM_026941424.2 mRNA upstream 26450 4315745 ~ 4350544 (+) False LOC113543315
XM_026940950.2 mRNA upstream 68942 4300799 ~ 4308052 (+) True wdr53
XM_026940925.2 mRNA upstream 86884 4283167 ~ 4290110 (+) False LOC113543011
XM_026940914.2 mRNA downstream 12161 4546135 ~ 4576648 (+) True LOC113543006
XM_026940916.2 mRNA downstream 12161 4546135 ~ 4576648 (+) False LOC113543006
XM_026941235.2 mRNA downstream 49053 4583027 ~ 4590956 (+) True bud23
XM_026941051.2 mRNA downstream 58467 4592441 ~ 4692571 (+) True LOC113543063
XM_026941052.2 mRNA downstream 58468 4592442 ~ 4689022 (+) False LOC113543063
trnap-ugg_21 other upstream 429988 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 748881 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 750964 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 751497 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1487606 2889315 ~ 2889388 (+) True trnat-agu_12
XR_004580320.1 other downstream 58466 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 403074 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 403074 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 403074 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 554127 5088101 ~ 5091097 (+) False sptssb

Expression Profile