RNA id: XM_034314865.1


Basic Information

Item Value
RNA id XM_034314865.1
length 5878
RNA type mRNA
GC content 0.41
exon number 15
gene id zgc:163121
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1983316 ~ 2018166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACGAGAGCAAGCCAAAACTGAAGATGTTGAGATCTTCAAAACTGAAGATGTTGAGATCTTCAGTTTGTCATTCGGGTGATGGAAGTCACCAGACACCAGTGAGGAAATGAGTtgtgtgtaaaagaaaattaaagattGATTTGGAAACCACAGGAAGTGACCTGTTCTAGGGAGTGAAAGAGTGGAAGTTCTGCGAGTGAGCAATGACTGAGAACCCACCAATGAAGTCTAACCttgttactgaataatacaTTTCCAAGCTTCGTTTTCTCCACTCCAGGGCGTGAagactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgcttcgAATAACCCCAGAATTCAAGGAGCCCAATGGAAATCAAACAGGATATGAGTGAACTCCTGAGCTGGAGCAAGCAGGACGGAGATCCCTTCAAAAACACAGAGCAGGCTGATGGAGGCTGCAGCACCACCGACTTCAGCAGCGTCCACGGCAAAGATCTCCTTCCTGCAGAGAACAGCGAGGAGCTGACCAAACACTTCCTGCAGGAGCTGCTGAACATCCTGCTGGCGTACATCAGCAAGTCTATGAACCGCAGCTCCAAAGTGCTGGACTTCCACCATCCGCACCAGTTGAAGGAAGGACTGGAGGGCTTCAGCCTGGAGCTGCCAGAGCAGCCAGACAACCTCGAGCAGCTGCTGGTCGACTGCAGGAACACGCTGAAATATGGAGTTAAAACAGGTCACCCACGATTCCTCAACCAGCTCTCAAGTGGACTGGACATCATTGGACTGGCAGGAGAATGGCTCACCTCGACTGCGAACACAAACATctTCACCTATGAGGTTGCTCCAGTGTTTATCCTTATGGAGGAAGTCCTTCTGAAGAAAATGCAGTCCATCATCGGCTGGTCTGAAGAGGAAGGAGACGGAATCTTCTGCCCGGGTGGCAcaatatcaaatctctacagcGTCCTGCTGGCCAGGTATCACTACTTCCCGAAGGTGAAGACTGAAGGCATGCAGGCGCTACCTCGCCTCGCCCTGTTCACCTCCGCACACAGCCATTATTCGATCAAGAAGTCTGCGGCGGTTCTCGGGATCGGCACTGAAAACGTCATCGCCGTGAAGTGTGATGAAAGGGGCAAAATGATTCCAGCAGAACTGGAATCCAGCATCATGGCAGCAAAAGCCAAGGGTCTGGTTCCGTTCTACGTGAACGCCACGGCAGGAACCACGGTCTACGGAGCCTTCGATCCTTTCACGGACATCGCAAACATCTGTGAAAAATGCGGCCTGTGGATGCATGTCGATGCAGCTTGGGGAGGCGGATTACTGCTGTCCAAGAAGCACAAGCTCAAACTGCAGGGCATTGAGAAGGCTTCTTCCGTCACCTGGAATCCCCACAAGATGATGGGCGCCCCGTTGCAGTGTTCTGCCATTCTGGTGCGACAGAAGGGTCTGTTGGAGGCGTGCAATAAGCAATGCGCTGAGTATCTCTTCCAAACCGACAAGCACTACGACATGTCGTACGACACCGGAGACAAGACCATCCAGTGTGGGCGGCACGTCGACGTCTTTAAGCTTTGGCTCATGTGGAAGGCTAAGGGGTCAGAAGGTTTCGAATCGCAGATCAACCACTGCCTGGAGAACGCTGAGTATCTTTACTACAAGCTGAAGAGCAGAAAAGATTTTCAGCTGGTCTTCCATAGCAAACCTGAGCACAGTAACGTGTGCTTCTGGTACCTGCCGAGCCGAGTGAGGAACATGTCCCCAGGtcctgacagagacagagaactTCATACGatcacTTCAAAGATCAAAGCCAAGCTGATGGAGAAGGGCGTGGCCATGATCGGCTACCAGCCTCTGGGAGAAAAGCCCAACTTCTTCCGCTGCGTCTTCTCCAACCCGGCCACGCAGAAGCAGGATGTGGACTTCCTGCTGGACGAAATCGCATGCCTCGGAGCTGAGCTTTAAGAGCTAACGAGTCGGAGTCGGAGGCTCGTTTTACTGTTTATGGACACAGAAcagattaatattattttcggggtataatataattatgaaGTTTTCATCTGTAGTGTGGTGCAGAGACTTAAACTAATTTGCACAATTTGTGTCACTTTACGTCGTTCGTTTGTGGGAATGTTAGTATATTCAGTATGAGAATAGTGTAATATAATTAAGAATgcacaaataattttatttgtctacATGAAGTTTTTTAGTATGCATCATACTAAAAGTCTGGGACCTCTAAAAATCTGCACGTGATCTGACTTTAATTCCAAATACTACAATTCATGACTAGCTAATATGAGCCACTTTAAGGCAAGCTTCAAATGCTAGAGCACATAAACAGGTGTTCTAGCATGACACCCTGATAGCTGCTACACGGTGCTGAGTCAGCTCCCCAGAAtctcccacaatgcattgcatgTGTGTCACTTTAAACCTTGAGAAATGGCTCAGAGCGATGCCTCCGTTTACcaagaaaatatttcactggTTTCGTAATAAACTAAAGCTGAGATTTATCCGCAACATAGCTTGAGTTCATATGGCTTTAGCGTCCCAGTGTGCAGTTTCAGGATGTAGAGCACTATGCATTATGCATTTTATGCGCTAACTCCTTATTAGCTGATTAGCTAACAGCTTATGTTAGCGTAAagtttccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaggctcccaaatgacatttttttagtTATAGTTCTCATTAAAAGTTGTGGGTTCTGTTGCAGGAAGAAGATAACATTGTGAGTTAAGTCTTTTAAATCCTAAATGCTAAACTTAGTGATAATTCATAACAATCTTTCTCACAAGCAGACAAGCAGAACTTATTCAAAGCATTAGTGCTTCCTATCGGGTTGCAATTGTGGTAGTTTAATGGATTGTGGTGTTCTTAATGGTCTCTgatagtttatttattgttattctgATGCTAATCATCTACCCATGGGTTCCACTTGTATTTAACAGTAACCAGAAAATCTTTACGTTTAAATTATTATAGATAGAGTAAAAACCTGTTCTAATTattcactgtatttaaaaacaatgttaaaaagGAAATGACATATCTTCACCTAAGTAATGTGTGAGTAATGTGAATATTCATGCAGAAAATAACATAAGGATGGTTTCGGTTTATGAAAAGCTCAGACTCTGTCCCGCAAGAGATGTCCTTGTATCGCACATAGcgcaaatcagaaatgcgcgCGCACCATGGTTAACTTGTTTTCCACAGACGGcgaagactgagaaaaagaattttttttaaaaatctacattttCTCATGCCTGAACAATTTGGGAataattttttgtgtgttgtagTTGGGGTTGGGGAGGTTTCctaaaacctggcaaccctgcgcACAAGCTTCAAATTCCAAATGAAAGACTTCTCGCACTTGTacgacttttttgttttgtcctgcGGAATCGCAGTCCCAGTGAACTCACCTAGATGAGCTAGCTTTACGCACAATGAGAGCTGGGAATGGGAATTCCCATCATCATTATCCATGGATCCTGCAGTACCCGAAAAATTATTTTGCTTGAGTAagcggtttttactctcatacaGGAGGGGCAGGAGTTTAGACAGGTCTACAAAATGAACTATAGGAATGAGCAGGATTaatcagaattccttcaggtgggaatttatttaaaaaaacaatccttCCCATATCTTTAGCCCTGGAGAATCTACATGAAACAGTcttaattaatcaaaatatgTATCTGTCTGcttgttttctgattttttttgcactgtgacTGTCCCACactattttagattttaaaaaatgggctGCATGTCACATGTGACTGACTTTCAATTGTTGTCTATGTGAGTTAATTTCGTTCGTGTGATGTGAGAGATGCTGCTGAAAATTGGATTCGTCACAGTGATATATATACGTGAATATTCAGTGCTACGTGGGAATTTTACTGTGTCGCCTGGAAATGGTGTAACTGAAATAGtttttactatatttactatatttcagtaaatatagaaaaaacTATATATGTGCCAAAGGATGCTGGATCTGTTCTTCTCACTGTAGTGACTCATCTGGCACAGAAACTGGATTTTTATTACAGTCTTTGGCCTGGAAATGGAGTGAATGTTGACGTTAAAAAATGAgaaggcattttttttaagaaaaaaaaagcaaaactgatTAATGTTAATGGGAAAAaatgagttttcttttcttatatGATTGTTACAGATTAATCGTACAATATTACCAGAGACACGGAActaagaaagtgaaaaaaaagtctctttcGATTTTCAGATTGTCAGGTTGTCTTTAAAATCCCTAGAatattcattatcattattttttgctagcatttttaaagtaaatgctTATTGTTGACCAAGACTTCTAATGACTTTAAACTCATCTCTTGTATATTAttgtttgggacacgcccattAGGTGAACCATTAAAACAGCGACATGCTTAAAAAGAGTGTAATTCGACACATGTTCCAGTTCAGATGTGGGTTTGACTTGCTCTGTCaggtaaaaacacacaatagTGGTCACCTGCTCTTTACTATAGGCTTCTATTCAAGTGCATTATGGTGCATTGAATAACGTGGAACAAAACATTCACAGAGCAGGAAATGGTAACAAAGGGATTTCTAAAGAACACAGTCAGGCACAGAAAATGTATACAGAAAATGTCTGATAGAAGTTTATACGTGAACAAAATTCAGAACCGTTGAGGTTCTCCTTAGGAGTAAGTGACTTCGAAATgtccttattttttattagaacTTAACAGAAGATCAGATCACATTTTGTGAGCAAGCACTTTTAAGGGTCCTTTGGTTGTCCCTCAACAAAAGtgttaattatccaatgaacccttaaagaacccttgaaaaaaaaacatttttcttctaaCCAAAATTGTAATTATGGGTTACAAACTCCAATTTTTTTGGTCATTCTTTTCATCTTAATACCGAGAAcctgatatttaaaatgtagctATCTTGCTACTTGGTACACTCTtaagttcttcaagggttctttgaagattgattggataattggacaactgaagaacccctAATTATTCAATGcatccttaaagaacccttgaagaacccttttcaTGTAGGTGGTTAATCATGtggtacaaactccaaattattgggAATTAATTTCGTCATTTATAAATTAGCCATCTTGGTACACTCCtaggttctttaaaggttcattGGATAATAAAGGGTTCTGACAAGGACATATTCTGTCCTAAGGTTGaccagtgaacccttaaagaacctttaaagaatcttttttttccaaaagtttACCAATACCAAGATAGCTAAATTTTAAATGACAAGTTCTAGATGTTGtgatgaaaataataaagagttgtagacaactgaagaaccttttcgttatccagtgaacccttaaagaacccttgaagaaccttttttatGTAACTGGTTAAGTGTGTAGTGCAAACTACAAActaattgaaattatttttgtattatttggtATATACTTAGGTCCTTcgagggttcttcaagggttcattggataattaagggaaATACTCTGTTGAAGGTTTCAAGGGGTTCACAGATTTTATCTTGATATGGCTTGGTAAAGGTCTACTAATATATTTTCTTAACATTTAGAATTATTTAGTACATTTAGTATTTATACTCTgtagtattttaatgtattttgtgcttcagttttattttttaatggtgTACTTTGGGAATATTCATGTAGAAGGTCATTGAAACATCTGAATTAAAGTTGCTTTAGGAAGCATCACCCATGATGCACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370836 lncRNA upstream 6601 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 88369 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 342590 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 346593 1624563 ~ 1636723 (+) False LOC113543035
XR_004580343.1 lncRNA upstream 351909 1624563 ~ 1631407 (+) False LOC113543035
TU370833 lncRNA downstream 98158 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 656267 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 713049 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 716953 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 771076 2789242 ~ 2789496 (+) True G313494
XM_026941180.2 mRNA upstream 6962 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314849.1 mRNA upstream 47687 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA upstream 47687 1902301 ~ 1935629 (+) False cdh6
XM_026940999.2 mRNA upstream 625834 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 835940 1128909 ~ 1147376 (+) True paxip1
XM_026941293.2 mRNA downstream 24034 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA downstream 25082 2043248 ~ 2060017 (+) True LOC113543213
XM_026941278.2 mRNA downstream 51195 2069361 ~ 2116180 (+) True xkr4
XM_026941306.2 mRNA downstream 114984 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA downstream 115047 2133213 ~ 2145237 (+) True tgs1
XR_003404390.2 other upstream 6007 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 847296 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 851633 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1144794 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1670588 275159 ~ 312728 (+) False snap91a
XR_003404395.2 other downstream 115048 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 163813 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 476066 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 637034 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 637034 2655200 ~ 2662399 (+) False LOC117599997

Expression Profile