RNA id: XM_034314780.1


Basic Information

Item Value
RNA id XM_034314780.1
length 3832
RNA type mRNA
GC content 0.44
exon number 10
gene id slco5a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8437381 ~ 8462127 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCTGAGTGCGGTGATTTTTCGAGTCGCGACGCGCACAATGTCCAAACAAAAATTGGGAtaccagaaaagaaaagagagggaggagaagaaaaagaaacaaagtgaGGGAAAACAACTCCTCACAAATTTCTTTCCAAAGCGAGCAGaaaaGCGCTACAGTCTGCGTAGTTCAGAATCTGGTCTGCTGGTCAGCTGTTTTGACATAGGCAGTCTCCTCATTGTTGTCTTCATCAGCTACTTTGGTGGACGGGGTCGGAGACCACGCTGGCTTGCCATAGGGGGAATGGTCATTGCTGTGGGCGCTGcacttttttccctccctcacttcatctctccACCTTATCAGCTGGAGCAGCTGAACACTACAGGACGGGGGGAGGGGCTCTGCACCATTACCAATAGCAGTAGGAGGGAGGGACTGGAGGCGTGTCCACGGGACCAAGAAGACAGTGAGCATGCTTTGTATGTGGCACTGTTTATTTGCGCTCAGATTCTGATTGGCATGGGGTCCACACCCATCTATACCCTTGGACCCACCTACCTGGATGATAATGTGAAAAAGGAGAATGCTTCGCTTTACTTGGCAATCATGTATGTAATGGGAGCTCTAGGTCCAGCTGCTGGCTACCTGCTGGGTGGAGTTCTGATTGGGTTTTACGTGGACCCAAACACTGCTGTGAACGTTGACCAGAATGACCCACGTTTTGTAGGAAACTGGTGGAGTGGGTTTCTTTTCTGTGCTGTGGCCATGCTGCTAGTGATATTCCCCATGTTTGCCTTTCCAAAGAAGCTTCCCCCTCGCCACAAGAAGAGCAGCAGGAAGAAAAAGCGTGTGGGGGACCTGGCAAGTGATGATGAGGTGATGAAGGAGAAGAGCCAAGCCGTCTCTTCCTCCATTGGCTTTGGAAAAGACATCAAAGATTTGCCCAAGGCAGCCTTGCGTATCTTGAGCAAtgtcacatttttgtttgtgagtTTGTCATACACAGCAGAGTGTGCCATTGTTACAGCCTTCATCACTTTCATTCCTAAGTTCATTGAATCTCAGTTTGGGGTTCCAGCATCCAGTGCCAGTATCTACACAGGTTTGGTAATTGTGCCAAGTGCTGGTGTTGGGATAGTGCTGGGAGGTTATATTATTAAGAAGCTGAAGTTGGGAGCAAGAGAGTCAGCCAAACTGGCCATGATCTGTAGTGGAGTGTCTCTGCTCTGTTTCTCCACACTTTTCATTGTTGGCTGTGAGAGCATTAATCTAGGAGGAATCAACATACCCTACACTACTGGGCCCACATTGACTCTGTCCCATCGGAACCTAACAGGGGGCTGCAATGTTAACTGTGGTTGCCGGATCCATGAGTATGCTCCAGTGTGTGGTTCTGATGGAATTACGTACTTTAACCCCTGTCTGGCTGGCTGCAGTGGTGTCTCCAATGACAGCTCAGGAATCAGGAATTATTCAGACTGTGCTTGTGTACAAAGCAGACAGGTAATCACTCCATCTGGAGGGAATCACGAGTTGCAAGTGGTCATTGTGAAAACGTATCTGAACGAGAATGGCTATGCGCTCGCCGGCAAGTGTGAGCGCACCTGTGGAACGCTCATAACcttcctcatcttcctcttcatTGTCACCCTGATAACTGCCTGTGCACAGCCTTCAGCCATCATAGTCACTCTGagGTCTGTGGAAGAGCAGGAGAGACCATTTGCTTTGGGAATGCAGTTTGTTCTTCTTAGAACACTCGCCTATATCCCTACTCCAATATATTTTGGCGCAGTGATTGACACCACCTGTATGCTCTGGCAGCAGGACTGTGGTGTTCATGGATCCTGTTGGGAGTATGATGTGACGTCACTTCGGTTTGTCTACTTTGGATTGGCAGCCAGCCTCAAGTTTCTGggcttcttcttcatcttcctcacATGGTATTCACTGAAACGGCGTGATGAGCAAGCACACATGCATGCGCACCCTGTATCCCCACTGGACACAGTGAGCCAGTTGATGTGTCATGCAGGGTGGCAAAAAGGTCATGCTCGCACGCGCTCCTGCCCTGTCTTCCTGCCCCGCCCCCACGAACACTGCCATGCTGCTGTAGTGGCAACTGGACATGCCCTAAGCCGTGGCAACAGTTGCCCCAGCAATGGCCTGAAAGCAATAACCCTGCCCATCAGGTCTCTGGAGAAAGTGGTGATATGAGAGATTAGTgcagatagacacacacacatacacaaactcacacacacatttacacacccaAATGCATAGACAGGGCATACCTGAAGATCAAGTGGAGTCTCCAGCTCCCCTATGTCCTCAGAGCCACTGCTGGTGCCTTTTTTCCCTCCTGAAATACACTACAATCAACACAGTTTGTAAAGTATTGGACTTAATACCTCACTGGAATTGGTAATACCTCTCTCATTCTTACACATTTACAGAGACTCTTTCTCCTCCACATGGTCTGCACCATTTCCTTTTagtcacacacactacacaatatgACCAGTACCACTTCGttatacatacacattacacattaaaaatTGTTTCTGAAGGGCCAGTACTGAACCTTTTGTCAATCTTGTGCATAGACACACAAGTCTGATTCCACACACATGTTCACCATcctattctgttttttttctgacagtagtgtgaAGAGAGCCTAAAGTGATGCTGTAGGTATTCACACACTTGTCTATCATTCCACTGATTGCCCACTTGCTTGGTTGCTTGACTGATTAGTTAGTGATTTAATTCAACAGTATTGGGTATCGTACCATGTAGAAAGGAGGAATGGATATGGAATTCAAGCTGAATCCTGCATTATGCAAACTTTTCTCTCCTTCCTACACTGAGATCAGTTAAACCCAACAGGAAAATGCCACACTTTCACATTCAGTGAGTGCttcaaaatgcaaatgtgaaaCTGTATTACTTATATTGTCACTGTTCCTCTGTACTGAGGAACTATGTGTCTGTTACACTGGATTAAAGTAACTCATGGGAAATAATATAAGTATTCCAAGGGTTTAACTGGGTGTTTTGATGTCcaaattaaagatatttttaataaaaacacaacataatgttgttgtcattttttaaaagctttaattGGTGTAGGTGCTGCAGAGATGGTAACTCGAGTTAGTGGCTCAGACTTAAGTCGAACCTAACTAACCCGTGAGTAGACTCTTGATTGACTACAGCATAGATAGAAACTTGAGCAAATATTAGGACTGTCCAAAGACTTATACAGCTTTGCATGTCAATTTAATGACTGTTGCACACAATCATTTATTGCAATGGTATTCTTGTTCAGCTGACAGTGATGTTAGGTTCGGTACAGTTTCAAACAGTGAGCCTTTGGTTACAAAATCTGTGCATGACCAAAGTGATAAAGGACAACTTTAAATTGGCATATAAAAAAACCACCCAGAAAAGTTGGTTAATATGAGGTACCAAGAATGCTAGCTTGCTGTTCCAAGAGCTAGAAATCATTATACTGTTTGTTTTAGTAAATGACTTCAACAATGATTTTCATGTTATAGCTTTGCTTGCAAATATGCTCCATAATccaactgtcttttttttcttcttcataaaCCAATGTAATTTTAGTTTTCACTTTTCTGCTCAGATGCACAGGCATCTAAGTGAGcttaattgttattttaatcttttcaaTAAATGCATGAAAGTGAGTAAGAGAGAGGAAAGTGTATAGAATCAGTGTGTACAGTTTCTGACTAAATAAGAGTAGAACTGTGTGCACtgaaattggacagttgaagattagaaaaatcacctggtctttttcca

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375146 lncRNA upstream 62089 8376785 ~ 8377093 (+) True G316756
TU375144 lncRNA upstream 105651 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 107396 8331506 ~ 8331786 (+) True G316752
XR_004580332.1 lncRNA upstream 177470 8260724 ~ 8261712 (+) False LOC113543009
TU375132 lncRNA upstream 177474 8259258 ~ 8261708 (+) True LOC113543009
TU375442 lncRNA downstream 125868 8587995 ~ 8588211 (+) True G317008
TU375461 lncRNA downstream 199159 8661286 ~ 8661776 (+) True G317027
TU375465 lncRNA downstream 227308 8689435 ~ 8691471 (+) True G317031
TU375493 lncRNA downstream 264214 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 331587 8793714 ~ 8793944 (+) True G317113
XM_026941191.2 mRNA upstream 6935 8427819 ~ 8432247 (+) False lactb2
XM_026941192.2 mRNA upstream 6935 8428127 ~ 8432247 (+) True lactb2
XM_026941385.2 mRNA upstream 16937 8386512 ~ 8422245 (+) False slco5a1b
XM_026941384.2 mRNA upstream 16937 8386513 ~ 8422245 (+) True slco5a1b
XM_034314688.1 mRNA upstream 59716 8334828 ~ 8379466 (+) False esyt2a
XM_026941421.2 mRNA downstream 5255 8467382 ~ 8476972 (+) True adhfe1
XM_026940904.2 mRNA downstream 41888 8504015 ~ 8505230 (+) True LOC113543002
XM_034314640.1 mRNA downstream 90120 8552247 ~ 8585499 (+) False LOC113543000
XM_034314639.1 mRNA downstream 90176 8552303 ~ 8585499 (+) False LOC113543000
XM_034314636.1 mRNA downstream 90207 8552334 ~ 8585499 (+) False LOC113543000
TU375135 other upstream 169984 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 175121 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 743263 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1303681 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1494574 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 349830 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 950196 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1497202 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1725624 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 2074304 10536431 ~ 10562994 (+) False capn10

Expression Profile