RNA id: XM_026941192.2


Basic Information

Item Value
RNA id XM_026941192.2
length 1739
RNA type mRNA
GC content 0.41
exon number 7
gene id lactb2
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8427819 ~ 8432247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTATACCTATACAAAATTAGAGGTAAAAAGTGGTGTTAATTATATTCACTCCTTTTGTTGTTAGTCACCAAATTCATCATTAACACGGAAGTGTGTGATCTGACTGGCAGCTAACAAGCAATAGGCTAATAATCGGATCTGAGATAACTCGCACAAAATCTAATGAAACAAACGAAAcctttatatttatgcattatGGATGAATTTCCCAGTATATTATGGCATAGCAAATGCGCAGGCGCAGCAAAGTTTGGGGGCGGGGCAGCGCGAATAGGTTTTAGGCGCTCAaatagattgattgattgattgattgataacaaaattataattatgtttttaaatactgtaattgTTTGCTGCATTTTTCTGCAACTTCTGCTGCAAGGTTTTTCGTACAGAATTGTGATATCAGCCCTGGGCTCTGCACATAGATTAACACAGCCCCAGCTGAGGGTCATTTAATACACCTGAGAATCAGAtattagagaaaataaatgatatagTCTTTGTTGGTCCCTGTCTGCCCCCTTAGAACCTTTGCCCTGAATACTACAGCTGCTCAAATGCCTCTATAgattaaaagaaatgaaaactaaCAAATTAGCAAAACCAGTATGCCTATATAGTGATCTGATCTTGCACTGCTGGAAATCCTGGACACAGTAGAAGGCAAttattgcaaatGCGTGTGTTAATAGACACTGGGGAACCTTCTGTTCCTGAGTACATCTCTAATCTGAAGCAAGCTCTGTGTCAGAGCGAGTCGTCCATCCAGGAGATCCTTGTCACACACTGGCACCATGACCACACAGGAGGAGTACCTGACATCCTTACAAACATACACTCAGATTTGCAGGTGAGTAAGCTCCCTCGTTCTCCCCCACAGACAGAGGCAATTGGGGATGGGAAGAGGAAATATACATACCTTAAGGACGGTGATGTTATCAAGACTGAGGGAGCCACATTACGGGTGGTGTTCACCCCAGGCCATACTGATGACCACATGGCTCTGTATCTGGAGGAGGAGGGAGCGGTGTTCTCAGGAGACTGTATTCTGGGGGAAGGGACAGCTGTGTTTGAGGACCTACATGATTACATGCGCTCACTGCAGTTACTGCTTGACATCAATGCAGACATCATCtacccaggtcatggtcctgtgGTGTTAAGTGCGTGCAATAAGATTCGGGAGTACATCACCCATCGCTCCGCCCGGGAGCAACAGATTCTGTCTGTACTGAGAGATAACCCTGGGGATGCCTTCAGTTCCTCTGCCCTGGTTAAACTGGTGTACAAGgataCCCCTGAACACttacacagagctgcagaaatcAACCTGGTTCATCACTTAAAAAAACTACAGAAGGAGGGAACAGTCTGCTTGGTTGGAGATTCAGGAAAGTGGAAGAGCAAATTGTGACTACCACCATAACAAAcattcacaataaaaaaattaattcttcCATAAACTACACTTAATCAGGTTAGACTGTTTAATTGTACTGAGtcaaatatttgtttgtgtatatctctccctctgtgctcttttttcccccttctctcAGTGATTATTGAAAAAGCATGCATTAAAAGTACCATATACCACAAATGcatcattacattatatatcTATTTCATAGAGTTGCGGTGAATATCTGATAAATTTGAtgattaaaattgtaaaataatttgaattatCAGCACTTTAATATTAAACTTCTAACTTTAATAGACCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K16639 LACTB2; endoribonuclease LACTB2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375146 lncRNA upstream 51034 8376785 ~ 8377093 (+) True G316756
TU375144 lncRNA upstream 94596 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 96341 8331506 ~ 8331786 (+) True G316752
XR_004580332.1 lncRNA upstream 166415 8260724 ~ 8261712 (+) False LOC113543009
TU375132 lncRNA upstream 166419 8259258 ~ 8261708 (+) True LOC113543009
TU375442 lncRNA downstream 155748 8587995 ~ 8588211 (+) True G317008
TU375461 lncRNA downstream 229039 8661286 ~ 8661776 (+) True G317027
TU375465 lncRNA downstream 257188 8689435 ~ 8691471 (+) True G317031
TU375493 lncRNA downstream 294094 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 361467 8793714 ~ 8793944 (+) True G317113
XM_026941385.2 mRNA upstream 5882 8386512 ~ 8422245 (+) False slco5a1b
XM_026941384.2 mRNA upstream 5882 8386513 ~ 8422245 (+) True slco5a1b
XM_026941045.2 mRNA upstream 48661 8334824 ~ 8379466 (+) True esyt2a
XM_026941189.2 mRNA downstream 5134 8437381 ~ 8462127 (+) True slco5a1a
XM_034314780.1 mRNA downstream 6935 8439182 ~ 8462127 (+) False slco5a1a
XM_026941421.2 mRNA downstream 35135 8467382 ~ 8476972 (+) True adhfe1
XM_026940904.2 mRNA downstream 71768 8504015 ~ 8505230 (+) True LOC113543002
XM_034314640.1 mRNA downstream 120000 8552247 ~ 8585499 (+) False LOC113543000
TU375135 other upstream 158929 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 164066 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 732208 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1292626 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1483519 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 379710 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 980076 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1527082 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1755504 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 2104184 10536431 ~ 10562994 (+) False capn10

Expression Profile