RNA id: XM_026941205.2


Basic Information

Item Value
RNA id XM_026941205.2
length 2874
RNA type mRNA
GC content 0.49
exon number 15
gene id plcd1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2808427 ~ 2834932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCACCCTTGCAACACAGACCGGGGACTCCAGAGGGCGGCGCGGGTTTTCAGCAGGTTTAAACACAGCTCTGTGGACAAGGTCGAGCTTTGTAGAACTTGTCAACTTCCCGGAGCACAAAGTCATATAACTTTGGCTTCTTTGTCTTATAAATTTTTTAGCAAAAACCGAATTCTGCTGCGTTTTCTGAGGAGAGAGAATTAGCGCGTTAGCTGCTCTGAGGTAACTGCTGACGCCTTCATCAGCCtccttcttcttgtttttccgTCAGTATTTCTGACAGCATGGGCTCCAACGGCACAGCAACACCACAAGGCATGGATGGAGATCCGGATTTGAATTTTCTTCTGAACGGTGCAGAGCTCGTGAAGGTTCGCTCGGGCTCGTGGAGGAAGGTGCGATTCTACAAGCTGCAGGAGGACTGCAAGACCGTGTGGCACGAGTCCAAAAAAACCCTGCGGCCAAAGCACACCTTTTCCATTGAGGATGTAGAGTGTGTGCGCTCTGGCCGGCACACGGAGGGTCTCAGGAAGTACACAGACGAGGCGTTGGAATCTCGGGCATTCTCCATCCTGTTCAAGGGCCGCCACAAAAACCTAGACCTGATCGCCACCACCGAGGAGGAGGCCAAGCACTGGGTGTCAGGCCTGGATAAGATCATCTCCAACATGAGCAAGCTCAGCCAACAACAGAGGACTGAACACTGGATCTTCAACTGTTTGCGTAAGGCTGACATAAACTGTGACAAGAAGATGAGTCCAGAAGAAGTGAAGCGCTTCCTGCAGGACATCAACATAGAAGTGGACAATGAATACGTCAAGTTGCTATTtgaaAAATGTGATCAGTCCAAATCTGGCTTACTGGAGGGAAAAGAAATTAAGCACTTCTATGAGATCCTGACTGACAGGGAAGAGATCGGCGTAATCTACGGAACGTATGCGAAAACTGAGGGACTAATGAGTGCTGCCAACCTGCTGAACTTCCTGACAAAGGAGCAGAGGGAGAAGGTGGACCTGACTCACGCCACACAGCTCATCGAGAAATATGAAGTAGATGAAACGGCCAAAGCAAAGCAGCTGATGACGAAAGACGGCTTTCTGATGTTCCTGCACCAGCCCGAAGTGCTGATCATGAGCCCGGCCCATAAGAGTGTGTACCAGGACATGAGCCAGCCATTAAACCACTACTTTATCTCCTCCTCTCACAACACGTACCTTCTGAAAGACCAGCTTAAAGGCCCAAGCAGCACTGAGGGCTACATACGAGCGCTAATGAAGGGCTGTCGCTGCGTGGAGCTGGACGTCTGGGACGGCTCAGACGGGGAGCCGATTATCTACCATGGCTACACGTTGACCTCCAAGATCCTCTTTAAGGATGCCATCCAAGAAATTAAGGAGTATGCCTTTAAGACGTCAGAGTACCCAGTGATCCTGTCCCTGGAGAACCACTGCAGTGTAGACCAGCAGATCCTGATGGCCAAGCACATGCACTCCATCCTGGGTAGTGCTCTGATCACCAAACCCCTGGGAGAACACATGCCCACAGCGTTGCCCTCTCCAGAGGAGCTGAAGGGTCGGTTTCTGATCAAAGGCAAATGCCTGAATAAACTGGAGGATTACTTCTCAGACCAGGCAGCTACAAAAGAAGACGAGTCTgtgacagaagaagaagatgcccgtgatgatgatgatgaggatcaTTCTGAAAACAATAAGAAGTCAAAGACACTGAAGCTAGCTAAAGAGCTCTCGGACCTCGCAATCTACTGCAAAAGTGTCAAGTTCCAAGGATTTGGGCACGCGCGGACTCATCAGTCCTTTTACGAGATGTCCTCTTTTAAAGAATGGGATGCACTGAATTTTGCAGAGAAGTCAGcaaatgAATTCATTCGTCATAATGTGGACAAACTGAGTAGAATTTACCCCTCTGGAGCAGTAAGGACAAATTCCTCCAACTTCAACCCCGTGCCCATGTGGAACTCCGGCTGCCAAATTGTGGCCCTCAACTTTCAGACGCCGTGCGCAGAGATGGATCTGAACCAGGGCCTGTTTAGCCAAAATGGACAGAGCGGCTACATCCTGAAGCCGACCTACCTCCGAGAAAAAGAGTCTGAGTTTGACCCCATCACGCTCATCCGAGGACCATGGCTCAAGCACATCGAGTTCCATGTGATGGTGATCTCAGCACAGCAGTTACCCAAAATGAGTGAGAAGTCGCTATCCATCGTAGATCCCCTGGTGCGAGTGGAGATCCACGGCGTGCCTGCGGACACGTCCAAAAGAGAGACGCAGCACATTCAGAACAACGGTTTCAACCCCATGTGGAACGAGAATTTCCAGTTTGACCTATACGTGCCTGAACTTGCGCTGGTGCGCTTCGTTGTGGAGGATTATGATAGCGTGTCCAGCAACGACTTCATCGGCCAGTGCACAGTGCCGTTCACCAGCCTACAGACCGGATATCGTCATGTGCCGCTGTACAACCAGAATGGAGACCTCCTCTCCTCAGCTCAACTTTTTGTTCACCTCATGGCTGTGGACGCAGAATAAGTCTAAAGACCATTATTCCAGCGCTTCCCATCCAGTCTAAAAACCTCAGCCTGGCTGAGGAGGAAAGAGCTGAACACAAGACTCAGGTTGGAGCTGGACcagaacagaacaaaaactGAGCAATAATTTAACCAGTGAGACACTATAAGGCTTTAAATCTACTCATAACATCCACCACGGTCAACACTAAGCAACTAAACATGTAGCTGTAGTACAATAACCTGACGAGTTAATAAACTagattaatattttcttatagatgtttttagatgtttttaaagaGTGCTACTTGGCTTCTAATACATTCCACTATTTAAGatttta

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371354 lncRNA upstream 18931 2789242 ~ 2789496 (+) True G313494
XR_004580285.1 lncRNA upstream 71839 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA upstream 73043 2735119 ~ 2735384 (+) True G313465
TU371292 lncRNA upstream 133781 2674433 ~ 2674646 (+) True G313443
TU370833 lncRNA upstream 684993 2116324 ~ 2123434 (+) True G313052
XR_003404407.2 lncRNA downstream 107555 2942487 ~ 2945207 (+) True LOC113543325
TU371493 lncRNA downstream 241117 3076049 ~ 3076370 (+) True G313607
TU371707 lncRNA downstream 464166 3299098 ~ 3299306 (+) True G313796
TU371743 lncRNA downstream 646168 3481100 ~ 3489299 (+) False LOC113543208
TU371775 lncRNA downstream 689377 3524309 ~ 3524518 (+) True G313853
XM_026941137.2 mRNA upstream 80359 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA upstream 80359 2718759 ~ 2728068 (+) False ralab
XM_026940928.2 mRNA upstream 90729 2714439 ~ 2717698 (+) True c21h7orf25
XM_034314885.1 mRNA upstream 147006 2655200 ~ 2661421 (+) False LOC117599997
XM_034297694.1 mRNA upstream 153279 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_026941250.2 mRNA downstream 25353 2860285 ~ 2871256 (+) True hhatla
XM_026940933.2 mRNA downstream 37597 2872529 ~ 2878715 (+) True klhl40a
XM_026940823.2 mRNA downstream 140714 2975646 ~ 2985302 (+) True bmi1b
XM_026940953.2 mRNA downstream 179554 3014486 ~ 3019463 (+) True nebl
XM_026941475.2 mRNA downstream 245084 3080016 ~ 3082751 (+) True nrn1b
TU371295 other upstream 132579 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 132579 2675322 ~ 2675848 (+) False G313445
XR_004580351.1 other upstream 146028 2655200 ~ 2662399 (+) False LOC117599997
trnat-agu_12 other downstream 54383 2889315 ~ 2889388 (+) True trnat-agu_12
trnas-aga_13 other downstream 790484 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 791028 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 793100 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 1112003 3946935 ~ 3947006 (+) True trnap-ugg_21

Expression Profile