RNA id: XM_026941207.2


Basic Information

Item Value
RNA id XM_026941207.2
length 3978
RNA type mRNA
GC content 0.52
exon number 29
gene id trpa1a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 946792 ~ 965617 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGCCGCTCACAAGCTGAACAGCCGGACAGGAACAGCGGCTCTCACCAGACGCTATGTGTCCGTCCCGGTCTCAGCCGAAGTTCACTCACGAATACCAGTTTCTGATGGACATGGACGGAAACGGCTGCACGTCAATGAACGTCTTTAAGTGGGCTTTGGAGGGCAACGTCCCGGCACTGGAGGGCGACTCGAATAACCTGAGCATGCGGGACGACGGCGGCGCCGCCCCGCTTCACTACGCCGCCTCCAAAGGCCACATCCGAGTCATCAACCTCATCGTACAGCTCGCCGGCTCTCAGGagctggACATTGTGGATGATGAAGGAAACACTCCTCTGCACTGGGCCGTTCAGCAGGATCAGAGTGGAAGCTGTTTGGCTCTGCTGAGTCTCGGAGCGAATCCTAACATCCTGAACAAAGCGGCTCTCTCACCACTGCACCTCGCCGTCAGCCTCAGACACAACCACATAGTGGAGcaactcctgacacacagagagacgaATGTGAACCTGGAAGGCGATCTGGGAAACACACCTTTAACTCTGGCTGCTTCAGTGGACAACCATGAGGCGCTTCTCATACTGCACAGGCACGGCGCCAAACTGTGCTGCCAGAACAAGCTGGGTCACTTGGCCATCCACGCCGCCGCCTTCGCAGGAGCCAAGAGGTCCATGGAGGTGATTCTCCAAAAAGGAGAGGAGAAAGGCGTGCCCATTGAGAGACACATAAACTACGTGGACAAATCCATCAGCAGTCCTCTTCACCTGGCCGTACGTGGAGGAAACCTCGAGGTCATCAAGCTCTGCATCGCTCACGGCGCCAAAATCGACCAACAGCAGTGTGATAAATCCACCGCTCTCCACTTTGCGTGCACTCAGGGAGCCACGGAAGCCGTGAAGGTGATGCTCCAGGCGTACGAGAGAGtgtgtgacatcatcaacatcaccGACGGAGCGTTCCAAACACCgctacataaGGCggccatttttgaccactatgAACTGGTGGAGTATCTAATCTCACAGGGCGCCGACATCGACTTCCCCGACTGTAAAGGCCACTCTCCACTGCTGCTAGCGACCAGCTGTGGTGCCTGGAGAACCGTTAACCTGCTGCTGTCACACGGTGCCGATCTGACGGCTAAAGACAAAGCTGGATGCAACTTCCTGCATCTCGCCATCTTGCAGCCTCGAGGTCTGAAGAACCTTCCGGCAGAAGTTCTGCAGCATGAGCATGTGCGAGAGCTGCTGAACGATGAAGACTCGGAGGGCTGCACTCCTCTTCACTACGCCTGCAGGCTGGGAATCCCTGACTCCGTGAAGAACATGCTCGGCCTGGAGGTCTCACTCGACCAGAAGTCCAAGCAGAAGAAATCGGCCTTACACTTTGCAGCTGAGTACGGGAGGATCAACACGTGTCACCGGCTCCTGGAGACCATGACAGACACACGTCTGCTGAACGAGGGTGATGAGAACGGCATGACACCGTTACACCTGGCTTCACGAGGCGGCCATGTTAAAGTGGTCGAGCTGCTCCTCAGAAAAGGTGCTCTGTTCCACAGTGATTATAAAGGCTGGTCCTGTTTACATCACGCTGCGGCCGAGGGATACACGCAGACCATGGACAGCTTACTCACATCTAACATCAAACTCCTGGACAAAACCGACGGAGACGGAAACACGGCACTGCACTTGGCTGCACGAGCGGGACACGTTGCTGCCGTTCGCCTCCTGCTGTCCAGAGGAGCTCAGATCCTGCTGAACCGCAGCGACGCCTCCTTCCTGCACGAGGCCATACACAACGGGAGGAAAGACGTCACGTGCGCCGTGATCGACAGCGACAGGTGTGAGGAAGCCATCACTACGTTTAAAGTGAACTCAGCCAAACGCTGCACTGTCCTGGACATGATCGAGTTTCTCCCTGAGTGTTTCAAGCATCTTCTAGACACCTGCATTAAAGAGTCAGAGGAAGACGTGAACTCCTGCAGCTACTATCTGGAATATAATTTCCAGTGGCTTCAACAGCCAAAACAGTACGCTAAGGACAGGGAGAAGACGGAGAAAGAAGACGAATACAAACCCCTGGCTGCACTCAACGCCATGGTGGAGTTTAATCGTGTCGAGTTACTGACGCATCCAGTGTGCAAGAAATATCTGGAAATGAAATGGCATGCGTACGGGGTGAAAGCTCACTTGCTCAATATGACCATGTACACGCTGGGCGTTTTCCCGCTGACCTACCTGATCGTCAATCTGCGGCCCAATCTGAGCGTGGAGAAAAACGTGACGATCAAGATGGTCACTAATACTCTGGACAAGcagtgttATTTCATCACAACCTGCATGTTTCTGGTCCTCGCGATGAATTTATACGCAGTCGGCAAAGAAGTAGTGCAGATGTTTCAGCAGAGGTTAAAGTACCTGCAGGACGTGTCGAACGTGCAGGACTGGGCCGCGACCATCTGCTCTCTGCTCTTCGTCCTTCCTCTCCTGCTGAACGTGAAGAAATCGTGGCACTGGCAGGCCGGAGCTCTGGCGTCTCTCGCCTCCTGGGTCAACCTGCTCCTCTACCTGCAGCGGTTTCAGAGGTTTGGGATATACGTGGTGATGTTTCGGGAGATCTGCAAGACGCTGCTGAGCATCATTCTGATATTCGTCTATCTGATCCTGGCGTTCGCTCTGGCCTTCTACGCGCTGATGATCGAACAGAAACATTTTGGCCGTCTGTTTCTCTCGATGATGCAAACGTTTGCCATGATGGCAGGAGAGATCAACTACCAGGACAACTTCCTGAAACCCTTCATGGCCAGACATCTTCCCTTCCCCATACTGACGTACTTCATCTTCGTTTGGTTCGTCCTGCTCGTGCCGATTCTGCTCATGAACCTGCTAATTGGTTTGGCTGTGGGAGACATCGCAGAGGTGAAGAACAACGCCTGTTTAAAACAGATAGGAATGCAGATTGAACTTCACACTAATCTGGAGGAGCGTCTGCCCTCCTGGTTCATGAAAAGAGTCGACCAAATCTCCGTGAAGGAATTTCCTAACAAGTGCTACAAAGGCAAGAGGTGGTTCTTCTGTGGAGGTGAAGTGAACAAAGTGAGAGCACGGCTGAGTTCCAGCACACGGCAGTGCACACAGCTGGAGAGAGAACTCACCAAACAGAAACACAGactgAAGGATCTCTCTGAGTCTATGGAGAAGCAGCACAACCTGCTGAAGCTGATCGTGCAGAAGATGGAGATCAGCTCCGAGGCGGAGGAAAACGACGGCCCTCGAGTCCTGCGCGACTTCACGCACAAACTCAGCGCCAAGAGCAAGTGGGGGCCGCTGCTGCGCGCCGTTACGGCCaagaggaagtgacatcacGACTCGGACGCCGGTGCTGAGGGCCAAGTTTCACGCGAGGTCTAAACCTCCATCTGGGCTGCTTAgtgatatttattttcaaaagtaTACGCCATCTAAGGACACTGAGAAGCGAAATGTCACTACAGCGCGGTGTTTATTTCTCTCGCCTTCTTTCTGCTGGTTAATAAAGCGATGACGGCGTGAAAACTCCGACTGTGTCAGAAACGGTATGAAACACGACGCACAgtgtaacaataataaaatacattaaactgTCATGTTTCACAGTTAATGAAAGACTGCTCAGGATCCGTGTGGTGTAAATTACTCGCTTGTTTTGACATATTTTGGCGAACAGAACTGACTGAAGTTTATTAGAAATGATCACAGACGGATGCAGACAGAAACACTAACTGCAGGAGCGCATGGAACTaggataaaaaacaaacaaacacaaacaaacacaaacaaacacctcTAATTCACAGCTATTTCTAGTTACATCTATTTTGGTAATTATTCATCAAACTGTCTTTTATTGTAAAGCAGATTTAACAAAGTGAAACTTTCTCATGACACAAAAAAAGACACCTGTTATGAAGTTTTAGTTATTAATTCAAAAAAAA

Function

GO:

id name namespace
GO:0070542 response to fatty acid biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0009593 detection of chemical stimulus biological_process
GO:0050960 detection of temperature stimulus involved in thermoception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370266 lncRNA upstream 40346 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 60678 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 70912 875663 ~ 875880 (+) True G312531
TU370220 lncRNA upstream 80071 862387 ~ 866721 (+) True G312509
TU370234 lncRNA upstream 124046 821262 ~ 822746 (+) True G312517
XR_004580327.1 lncRNA downstream 11004 976621 ~ 980051 (+) True LOC117599981
XR_004580295.1 lncRNA downstream 124241 1089858 ~ 1104324 (+) True LOC117599954
XR_004580318.1 lncRNA downstream 397759 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 398619 1364236 ~ 1368869 (+) False LOC117599969
TU370650 lncRNA downstream 556684 1522301 ~ 1522511 (+) True G312877
XM_026940929.2 mRNA upstream 45168 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA upstream 45168 898218 ~ 901624 (+) False tmem70
XM_026941381.2 mRNA upstream 73026 868721 ~ 873766 (+) True rdh10b
XM_026941377.2 mRNA upstream 99775 820530 ~ 847017 (+) True jph1b
XM_026941295.2 mRNA upstream 218927 723451 ~ 727865 (+) True cbln2a
XM_026940965.2 mRNA downstream 38292 1003909 ~ 1012192 (+) True shhb
XM_026940830.2 mRNA downstream 88251 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA downstream 88251 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA downstream 88278 1053895 ~ 1066467 (+) False cnpy1
XM_026940831.2 mRNA downstream 88527 1054144 ~ 1066467 (+) False cnpy1
TU370232 other upstream 108270 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 634064 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 753558 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 753558 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 771251 174238 ~ 175541 (+) True G312191
TU370320 other downstream 163308 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 166266 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1000123 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1167597 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1216362 2181979 ~ 2185677 (+) True G313112

Expression Profile