RNA id: XM_026941223.2


Basic Information

Item Value
RNA id XM_026941223.2
length 2158
RNA type mRNA
GC content 0.47
exon number 4
gene id ppm1lb
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5121697 ~ 5191399 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttatgacagcGCGTCACACTCGTGTGTATTTTGGGgaagtggtggtgtgtgtgtatgagtgtggatgtgtgtgtgtggagaaggaGCTTTCAGCTCGCCTGCTGTCTGATTCTGTAAGACAGCTGATGGGGAAGGAGAGAGCACCGCTTCACTGCGGGTTTCTATGTAAATGAAAGCGCTGGACTGCGGCTGCACACCGGCGGAACCGGCGCCAATGCGCGCGCGACGCGCTCCCTTTTCcaggcaacaacaacaacaacaacaacaacaagagcTACAAAGTGTAAAACATTTCTGCTTGTTTGCACGTCAGGGATGGACTGAGACGCGCTGAAGGTGGACGTGATCAGCTCGAGCAGGTCAGTGAGCTATTTCCGGCGTGTGCGCGTTTGGATAAATGATAGGAGATACGATGACCCTGCTGTCTCTTCTGGGTCGGATCATGCGCTATTTCCTACTGCGACCGGAGACGTTGTTTCTGCTGTGCCTGAGCCTGGCTTTATGGAGCTATTTCTTCCACACCGATGAGGTGAAGACGATTGTGAAGTCGAGCCGCGACGCCGTGAAAATGGTCAAGGGCAAAGTGGCCGAGATCATGCAGCACGACCGGTTCGGCCTGGACTTGTCCGAGGCGGAGTTCTCCAAGAGCTGGGAGCTGAAGAGCCCCGGAGCCGCCGTGTACGCCATCCAGGGACGCCGAGATCACATGGAGGACCGCTTCGCCGTGCTCACCGACCCGGTCAACCGGAGCCACCCGTCTATCTTCGGGATTTTCGATGGACATGGTGGAGAGgCAGCAGCAGAATACGTGAAAACTCGCCTGCCCGAGGTCCTGAAGCAGCACCTACAGAATtatgagaaagagaaggagaacagTCTTTTGTCTTACCAATCCATCCTGGAGCAGCAGATCCTCAATGTGGACAAGGAGATGCTGGAGAAGCTCTCTGCCACCTATGATGAAGCAGGAACAACATGCCTGGTGGCGATGTTGTCTGAAAAGGAACTGACAGTAGGTAACGTGGGCGATTCCAGAGGAGTTTTGTGTGATAAAGACGGTAATGCCATCCCCCTGTCATATGACCACAAGCCCTACCAACTCAAAGAGCGCAAGAGGATCAAGAAAGCAGGTGGCTTCATTAGCTTCAACGGCTCATGGCGCGTGCAGGGAATCCTGGCCATGTCTCGATCTCTGGGCGACTACCCACTTAAGAAGCTAAACGTGGTGATCCCCGAACCTGACgtggtgacctttgacctggaCAAACTGCAGCCCGAGTTCATGATCCTGGCATCGGATGGCCTGTGGGACGCCTTCAGTAACGAGGAGGCCGTGCGTTTCATCCGCGAGCGCCTCGATGAGCCACATTTCGGCGCCAAGAGCATCGTGCTGCAGGCGTTTTATCGTGGCTGCCCAGACAACATCACAGTCATGGtggttaaatttaaaaagagtGGCACCAAAGTGGCTGAGCAGTGAACCACGGCTAATATGAACTAATAATATATTCAGCATTATCAGTATGAATACCAATCTATTTGAATATATTATTGGCTCATATTAATATATGTGTAAGGATGCAAATGGAAAACCGTTTCATGACTATTTTTGGAGCAAGAACTGTTTGTTACAATAATGTCAAATTAAAGTAAACTCACGTCATCCCATTATGTCATTTTCCTGAATCCTTTGTTTCAAATAGCACATGATGGAGAGAAAATGTATGAGAAGCCACAGCTTGTGTAATGGAGTAACAGAGGTCACTTTCCTTTTCAAATTTTAgcttaatattcatttattcatgttaaaGAGTATTGTTCAGTAATTACTATGGATGGTAAAATGGGTACATAGATATGAAAGTGAAGAATGTAAGTCAGGGGTGTGGGATATTAAGtggatttattataaaaaaaatcgcCAAGATGATTATGGTGCTTCAGGaattcaaatgaaataaaatgctttcCTTTGTAGATGAAAACTAAAGCACATGTAGCCTCCAGTAGAATTCGTTCAATGTCAGTAATTTCTTAAGGCAAGACACCACAGGTCACATCAGccatttttcagatttctgtatAAATTGCGTCCTATAACATATCTTCTCAtaaactgtaatgtgtgtgtgtgtgtgtgtgtgtgtaat

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372728 lncRNA upstream 142731 4978021 ~ 4978966 (+) True G314675
XR_004580298.1 lncRNA upstream 228419 4884210 ~ 4893278 (+) True LOC117599956
TU372681 lncRNA upstream 274980 4846192 ~ 4846717 (+) True G314636
TU372673 lncRNA upstream 320594 4800652 ~ 4801103 (+) True G314628
TU372656 lncRNA upstream 333283 4788100 ~ 4788414 (+) False pou3f2b
TU372867 lncRNA downstream 24973 5216372 ~ 5216588 (+) False kpna4
TU372881 lncRNA downstream 29247 5220646 ~ 5221823 (+) True G314800
TU372889 lncRNA downstream 131925 5323324 ~ 5323675 (+) True G314807
TU372887 lncRNA downstream 177235 5368634 ~ 5370815 (+) False si:dkeyp-97b10.3
XR_004580301.1 lncRNA downstream 183031 5374430 ~ 5383232 (+) True LOC117599958
XM_026940921.2 mRNA upstream 30424 5087839 ~ 5091273 (+) True sptssb
XM_026940920.2 mRNA upstream 30424 5088400 ~ 5091273 (+) False sptssb
XM_026941161.2 mRNA upstream 48558 5070618 ~ 5073139 (+) True LOC113543113
XM_026941160.2 mRNA upstream 51264 5060030 ~ 5070433 (+) False rabgef1l
XM_034314758.1 mRNA upstream 51264 5060175 ~ 5070433 (+) True rabgef1l
XM_026941224.2 mRNA downstream 5250 5196649 ~ 5197934 (+) True LOC113543161
XM_026941167.2 mRNA downstream 9622 5201021 ~ 5216591 (+) True kpna4
XM_026940841.2 mRNA downstream 31134 5222533 ~ 5226707 (+) False trim59
XM_026940844.2 mRNA downstream 31298 5222697 ~ 5226707 (+) True trim59
XM_026941016.2 mRNA downstream 58069 5249468 ~ 5322606 (+) True ift80
TU372849 other upstream 30600 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 163577 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other upstream 163577 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other upstream 163577 4937048 ~ 4958120 (+) False LOC113543089
XR_004580320.1 other upstream 428881 4592440 ~ 4692816 (+) False LOC113543063
trnat-agu_13 other downstream 28146 5219545 ~ 5219618 (+) True trnat-agu_13
TU373444 other downstream 703105 5894504 ~ 5896830 (+) False shox2
TU373737 other downstream 1035318 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1745941 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1942060 7133459 ~ 7135501 (+) True G316001

Expression Profile