RNA id: XM_026941224.2


Basic Information

Item Value
RNA id XM_026941224.2
length 1286
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC113543161
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5196649 ~ 5197934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAGCCGAACTATGGTCACAGATGGGGAATCTCAGTGTGAAAGAACACGGAGATATCTCCCCTGGGATTTGACCTCTTTCCTTATTTGTATGATTGTGGATTATCTGTACTGTATAAGAAGACACAACAAGAGCACACATCCATTCAGAAGAAACAGCTGAAGTGAGGACTGGTGAAGGTTTGGACAATGCAcattccacttccctttagtgCAACTATAAGGAGACCATCTATAGAGACAACGGAAGTATTAAGCAACCAGGACCTCGTCTACTGTATTGCTAAATCTGTAAGATACGCGCTTGAACCCTAGATTGTTCAGTAGCTTTAAACACAATGGGACTGCATGGTTCCAAAGTTCCCTCAGAAGCTCGGATTCTAATGCTTGGCCTTGATGGATCTGGAAAGTCCACCTTGCTCTACAAGCTGAAATACAATGAGGCCGTGGTGACTGTTCCTACTGTGGGCTTCAACGTGGAGATGCTGGAGACTAACGAGAAGGGCTTTGTGCTGACCGTGTGGGATGTCGGGGGCCAGCATCGGATGAGGGTTCACTGGGAGCACTACTATCAGGACACAGCCGGCCTGGTGTTTGTGGTGGACAGCAAGGACAAGACGCGGATGGCCGAGGCAAAGCAGGAACTGGAAAAGATCTTGGGAAATAAGAGTCTGAAAGGCCTTCCATTGATTGTGCTAGCCAACAAACAAGACTTGCCTGGAGCTGCAAGCGCTGGAGATGTTGCAGAGATCTTGAACTTGAAGGAGATTTGTGGCAACAGACACTGGTTTCTTCAGTCATGTTCGGCCAAGACTGGTGCCGGTTTGGAGGAGTGCTTTCGGATGATGGCCCACTTTCTTAAAACTGCAGTACGAGAAGGAGAGGAATGTCTACAGAGAGGAAGGAAATCATTTAAAGCAAAGACACAGCAGGATTACTGGTAAATTGAGCCATTGCTAAAATCAATGGACTACAGTTACAGTGACATGCCAGCAAAATGTCTCCACAACATAACAGAGCCACAATTTTCTCCTTTAATTTGCCACCTCTCTGTAACTGTGGTATGAAATAACAGCTTCTATGCACTATGTCCTGCAGATTTTTCTAAACTAATGTGAATTTCCAAAATTATGCTTCTACATTCTTATCTGTAAATGTACTTgtttgagtttgttttttttttaattctcttcaCAATTCCATTTATATGTTCTGTTTGGCAAAGTCCAGTTTGCTACTtgcaactttttaaaatctttttttatttctttctttatttttatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372866 lncRNA upstream 73247 5122698 ~ 5123402 (+) True G314785
TU372728 lncRNA upstream 217683 4978021 ~ 4978966 (+) True G314675
XR_004580298.1 lncRNA upstream 303371 4884210 ~ 4893278 (+) True LOC117599956
TU372681 lncRNA upstream 349932 4846192 ~ 4846717 (+) True G314636
TU372673 lncRNA upstream 395546 4800652 ~ 4801103 (+) True G314628
TU372867 lncRNA downstream 18438 5216372 ~ 5216588 (+) False kpna4
TU372881 lncRNA downstream 22712 5220646 ~ 5221823 (+) True G314800
TU372889 lncRNA downstream 125390 5323324 ~ 5323675 (+) True G314807
TU372887 lncRNA downstream 170700 5368634 ~ 5370815 (+) False si:dkeyp-97b10.3
XR_004580301.1 lncRNA downstream 176496 5374430 ~ 5383232 (+) True LOC117599958
XM_026941223.2 mRNA upstream 5250 5121697 ~ 5191399 (+) True ppm1lb
XM_026940921.2 mRNA upstream 105376 5087839 ~ 5091273 (+) True sptssb
XM_026940920.2 mRNA upstream 105376 5088400 ~ 5091273 (+) False sptssb
XM_026941161.2 mRNA upstream 123510 5070618 ~ 5073139 (+) True LOC113543113
XM_026941160.2 mRNA upstream 126216 5060030 ~ 5070433 (+) False rabgef1l
XM_026941167.2 mRNA downstream 3087 5201021 ~ 5216591 (+) True kpna4
XM_026940841.2 mRNA downstream 24599 5222533 ~ 5226707 (+) False trim59
XM_026940844.2 mRNA downstream 24763 5222697 ~ 5226707 (+) True trim59
XM_026941016.2 mRNA downstream 51534 5249468 ~ 5322606 (+) True ift80
XM_026941193.2 mRNA downstream 143075 5341009 ~ 5370897 (+) True si:dkeyp-97b10.3
TU372849 other upstream 105552 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 238529 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other upstream 238529 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other upstream 238529 4937048 ~ 4958120 (+) False LOC113543089
XR_004580320.1 other upstream 503833 4592440 ~ 4692816 (+) False LOC113543063
trnat-agu_13 other downstream 21611 5219545 ~ 5219618 (+) True trnat-agu_13
TU373444 other downstream 696570 5894504 ~ 5896830 (+) False shox2
TU373737 other downstream 1028783 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1739406 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1935525 7133459 ~ 7135501 (+) True G316001

Expression Profile