RNA id: XM_034314849.1


Basic Information

Item Value
RNA id XM_034314849.1
length 3957
RNA type mRNA
GC content 0.53
exon number 12
gene id cdh6
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1887750 ~ 1935629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAAGAGAGGCGTCACTCATAAGGAGGgcgaggaggatgaggaggaagaggaggaagagagaacgGACGTCCACGGCATCGGAAATCACGTGTGCTACATTTCAGCAGAGACACACGGTGACGCTTCCCCTTTGAGCCGGCACGCAGGACTATGAGGGTGGCAGCAATCTCCACTCTACAGAGCTTTAACCTGGGCAGATAGGACGACAGAAGACAATATGAGGACTTATATGACGGCGTTCCTGTTATGGGCGTGGGCGGCCCACTGCGCGGACGCCATGACGCTTTTAAGAGGAAAGGAAGTATCACGGCGAGAGAGGAACTTGGAGACTCTGAAGCGCTCCAAGAGAGGATGGATGTGGAAGCAGTTCTTTCTGCAGGAGGAGTACACCGGCACTGATTATCAGTACATCGGCAAGCTTCACTCCGATATGGATCGAGGAGACGGCGCGGTGATGTATGTCCTGACGGGCGAAGGTGCCGGGACCGTCTTCGTGATAGATGCAAACTCGGGCGATCTGCATGCTACGCGGAGCCTGGACAGAGAAGAGAAGCCATCCTACACGCTCCGAGCTCAAGCTGTCAACAAGAAGAACGGCCAGCCCTTAGAACCCGAGACCGAGTTCATCGTCAAACTCCACGACATCAACGACAACGAGCCCAAGTTTGAGAAGGAGGTTTACACAGCTAGCGTCCCCGAGAGGTCGCACATCGgAACTTCGGTTATTCAGGTGACGGCCCACGACGCAGACGACGAGATGTTCGGCTTGAGCGCAAAACTGGTGTACAGCATCAGTCAGGGTCACCCGTACTTCTCCGTCGAGTCAAACACAGGCATAATCCGGACTGCCTTAGGGCCCTCGGACATGGACAGAGAGCAGAGGGAGCATTACCAGGTAGTGATCGAAGCCAAGGACATGGCGGGCCAGAGAGGCGGCTTAACGGGCTCCACTATAGTCAACATCACCCTGACTGATGTGAACGACAATCCTCCTCAGTTTGCACAGAGTGTGTATCAGTTCAGCGTTCCCGAGCTGAGCGAGCCCGGCACCGAGGTGGGTCAGGTTCGAGCCTTAGACGCCGACATCGGGCCGAACGCCGAGATGGACTACACGGTGGTGGGCGGAGACGGCCTGGAcgttttctctgtaacagctGACAAAACCACACAGAATGGCATCCTCAGCGTCAGAAAGCCTCTCGATTACGAGAAAAAGAAGTCGTACACGCTGCAGGTGCAGGTGCGCAACACACACCCGGACCCGCGCTTCGTCAGCGTGGACGCTAAAGACCTGACTACGGTGCGGATAAACGTGGAGGACGTCGACGAGCCTCCGAGATTCGAGCGTCCCAGTTACGTGATGGAGGTGAAAGAGGACGCGGCTGTGGGCACCGCCATCGGGTCGGTCAGCGCCGTGGATCAGGACGCGCGCCGCAACCCGGTCAAGTACACAATTGATCGGCACACAGACGTGGACCGGATATTTAACGTGCACGCTGGGAACGGGTCTATATTCCTGCAGAAGCCTCTTGACCGAGAAGACCTTGCGTGGCACAATATTTCTGTGATCGCAGCCGAGTTCAATAACCCCCAGCAGACGAGTCGAGTGCCCGTGTACATCCGTGTACTGGATGTGAACGATAACCCGCCAGCGCTGGCCTCCTTCTACGAGACGTTCGTGTGTGAAAACGCTAAATCTGGTCAGAAAATCCAAACGATAACGGCGGTGGATCAGGACGAGCCGTCAGGCGGCCACCGCTTCTTCTTCATGCTGGCACCGGAGAGCTCGGTGAAGGCCAACTTCTCAGTGCGAGACAACGGAGACAACACCGCGGGCATCTACACACGACGAACGGGTTTCCGGCGGGCGCAGAAAAGCACGCACCTGGTTGCCGTGGTGATTTCAGACAGCGACTCCCCCATGATGAGCAGCACAGGTACGCTGACGGTGCGCGTGTGTACCTGCGACCGAGACGGAAACATGGAGATGTGCAGCGCTGAGGCTCTGAGCGGCACGGCCGGACTCAGCACTGGCGCGCTGGTGGCTATTCTACTCTGCGTACTCATCCTGCTCCtgATTGTTGTGCTGTTTGCTGCTCTGAAGCgccagaagaagaaggaacCCCTGATCATCTCTAAAGAGGACGTCAGGGACAACGTGGTGAGCTATAACGACGAGGGCGGCGGCGAGGAGGACACGCAGGCGTTCGACATCGGAGCTCTGCGCCACCCGGAGGTCATGGAGGAAAGCAGCAAACTGAGACGCGACGTCGTGCCGTCCGATCCGCCGTACCCACCGCCTCCTCTGCGCCGGACAGCCGTGACATCCCGAGACAACTCGGACGTGAGGAACTTCATCACGCAGCGCGTTCAGGAGCACGACAGCAGCCCTGTAGCGCCGCCCTATGACTCTCTAGCCACCTACGCCTACGAGGGTGAGGGCTCGGTCGCCGAATCGCTCAGTTCGCTCGGCTCGGGATCGTCCGAATCACCGCACGACTACAGCTACCTGAACGAGTGGGGGCCGCGCTTCAGAAAGCTCGCCGATATGTACGGGGCCGACGAGATCGAATGGGACTCCTAACACGTCTCAGCTTCCTCAAAATGGAATTCTTACAAAGCGTTGTATTTCTTACAAAGTGGAATTCTTACAAAGTGCCCTTCTCCTTCGCCCCAACTCGATCCAGCAGACAGGAAGACGTCTCACAGATGCTGATCTTCTGCAAAGTAGACGCTTTAAAACACGGAGTCGTAACGTAACTTGTTGACTTCTGCAGCTCTTTGGAATGAAAGTTGTCACGGCGAGGCATATTTTTCGGATAATCTCACGTGAAAACTGACATTACTGAAATAGGAAGGGCGCGGAATACGGATCGTTTCTGGACTCCTTCCTGAGAAACGCCTGAGCGTGAAACACCAACCGGTTCATGAAGGACCAAACTTTTAGCGACGTGTCTGTGGAACGTGGAGCTACAGTGCGAGAACAGCCAGCTCACACTCCACTGCAGCGTCGTCTATGTTAGCAGGCATTAACGATCCTGGAGCTCTGATTAGCTGAGCGTCAATCATCtgtatgctttttcttttttttttttcttttctttttttttttgacttttcagTATTACTTTTGATGTACATACATCTGTCAGTGCTTTCCGAGCAGACATGGTGCTTCAGAAATTTGGGTCGGGTAAAAGGTGTTTTCGTGATTGGCACTCGTTTTCATCATCTACTGGAGAAAATGCCAGAAGCTTCCAATTATCTACTCGCTCATAGGCAGGAAATGTGACTCGCATTTTGGCACACGTCTCAACTACATCCCACCATCTTGCATTCCCTTACACGAGAAGCCTATTTACAAAATCACCTCGtgctaaacaaaaaaattacatgcgTTCATTTCCAAGAGCGTCCTACCAGTTCTattttttaagaagaaaattGACAGAAATATCAATCCGTGTCCTTTTTCGAACATCCAAATCTACGAGTTTTACTCACGCGTGTGCTATGCGTGCTAATAACCACATCCCTGCACTGTTCGTCTCCTcttctgtgctgtttttgttaGTAATAAAAAACCCCCAGATGATTCATCCCCTCTCTGAATGATAATCGCAGCGGTCCGATGTTGAGTTATGACTAGGATGTTAAAATAAATCACCGCCCTTATATTTTTGCCCTCTGCGCCAGCCACGAAAATGAGTCTGGAATTGCATTCGCCGCCTCCGTTATCGAGGGGATGAAAAGaggttattttttaaagaatatacaTATGATTGTAGTCGGCTTCCAAGCAGCGGGTAAATATTTGTGGTTTAGGCGCTCAGAGTTCACCTGCAATATTCCCGTGCTTTGTCAGTGgtatactgtaaaataaaggtGATGCTAACccatgttgtaaaaaaaaaaaaaaaatgtggttttatgAAACAGTGCGTCGTCGCAGTGG

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580341.1 lncRNA upstream 225557 1624563 ~ 1662193 (+) False LOC113543035
TU370724 lncRNA upstream 247024 1624563 ~ 1640726 (+) True LOC113543035
XR_004580340.1 lncRNA upstream 247109 1624563 ~ 1640641 (+) False LOC113543035
XR_003404382.2 lncRNA upstream 247942 1624563 ~ 1639808 (+) False LOC113543035
TU370723 lncRNA upstream 251027 1624563 ~ 1636723 (+) False LOC113543035
TU370836 lncRNA downstream 38470 1974099 ~ 1976715 (+) True G313053
TU370833 lncRNA downstream 180695 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 738804 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 795586 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 799490 2735119 ~ 2735384 (+) True G313465
XM_026940999.2 mRNA upstream 530268 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 740374 1128909 ~ 1147376 (+) True paxip1
XM_026940830.2 mRNA upstream 821283 1053868 ~ 1066467 (+) True cnpy1
XM_026941180.2 mRNA downstream 30111 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 47687 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 59982 1995611 ~ 2018166 (+) False zgc:163121
XM_026941293.2 mRNA downstream 106571 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA downstream 107619 2043248 ~ 2060017 (+) True LOC113543213
TU370328 other upstream 751730 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 756067 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1049228 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1575022 275159 ~ 312728 (+) False snap91a
TU369781 other upstream 1694516 189539 ~ 193234 (+) False pnrc2
XR_003404390.2 other downstream 30111 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 197585 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 246350 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 558603 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 719571 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile