RNA id: XM_034297738.1


Basic Information

Item Value
RNA id XM_034297738.1
length 5525
RNA type mRNA
GC content 0.43
exon number 15
gene id kcnq3
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7883895 ~ 7935093 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTCGCGCCTCTCCCACCGCTCCCTCCGAGTCGTGCGTCTGTTTCAGCACTAGTGGCGCGTAACGGAGGTGAAATTCAAGAGGCATGCTTCGTCGGGAGCGGTCGCGTTTTGATCTCGATAGCGTGTGTAGCGTGCGTCtttgtgtattatgtattgGTAGTGAATATTCGTGACTCTGATCTTTGTCTCCACGTTCGGCTCATTGTTCCTTGTGGCCGTGTGTgagttcttgttttttctttgttatatttCAGTCTCGCGAATGTGGTGTGATATTGTGGTGTGATTTTACCACCTCAGCACTACCGCTCTTCTTGTCtatgtgtgtttgggggggtgCTTGACAGGCGTTCGCTTTCTGTCCTCAGCCGATCCGCATCACGCATCTGTCCTCCATCAAGATCCTGGAATGACCAACCGCACATAAAGGGGCTCGCGCCCTCCTGCTCGGATCATGGCATGCGCCTCATCATGCACTTGCATACGCGCGCCGCCGACGCTCGACAGCAGTGAACATGGGGCTCAGGTCGAGAAATGGCGCTAACGGCGCCCAGGACTCAGGCGAGCGGCGGAAAGACGCGGTGGCCGGGGAGCTCGAGACATGCACGAGCCACGAGCGGGATGGCGCACTGCTGCTCGCCACCTCGGCGAGGCAGGCAGAATTTAAACGGGGCTCGCAGAACTTTGGCCTTTTGGCCAAGACGCCTATCGGCTACACGCGGCCCGTGAAGAGGAACAACATCCGGAAGCGGCGCATCCAGAATCTCATCTATGATGCACTCGAGAGACCGCGGGGATGGGCGCTGCTCTACCACGCGTTTGTGTTTTTGATAGTCCTGGCGTGTCTTATTTTGGCAATTCTAACAACATTTAAAGAGTATGAAGATGACTCAGGTCACTGGCTGGTGGTTCTgGAGACattcactatttttatttttgggagTGAGTTTGTGCTGAGGATCTGGGCAGCAGGATGCCGTTGTAGATATAAGGGTTGGAGAGGACGTCTCAAATTTGCTCGCAAACCACTGTGTATACTGGATATCTTTGTGCTGATAGCATCAGTGCCGGTAGTTGCTTTGGGTAACCAGGGAAATGTTTTGGCTACGTCTCTTCGGAGTCTGCGCTTTCTGCAGATTCTGCGTATGTTGCGCATGGACCGACGAGGTGGCACCTGGAAACTGCTGGGATCTGCAATATATGCTCACAgcaaggaactGATCACTGCGTGGTATATTGGCTTCCTGTCTCTTATCCTGTCCTCCTTCCTGGTCTACCTGGTGGAGAAGGATGTTGTCTTCATGACGCTACCCACTGATGAAGATGGCACCCCAACACCTGCCCAGGACTTTGATACCTATGCTGACGCACTGTGGTGGGGACTGATAACTTTGACAACGATTGGGTATGGTGATAAGACACCAAAGACATGGCCAGGACGTCTACTTGCCGGGACCTTCACTTTGATTGGTGTTTCATTTTTTGCTTTGCCAGCGGGTATTTTGGGTTCTGGTTTGGCTCTTAAGGTTCAGGAGCAGCATAGGCAGAAACATTTTGAGAAACGAAGGCACCCTGCAGCTGGACTCATACAATCAGCCTGGCGATACTATGCTACTAATCCAGTAAGAGAAGACCTTACAGCAACATGGAGATTCTATGAAACGGTGATCTCTCTGCCATGCTTCAGGTACATACAgaaagaaaatttGGAAGCGATTGCAAGTCAGAAGCTGACTCTGCTGGATCGTGTGCGGCTGCCCACGCCACGGCCATCTTCAGTGAGAGGCTGGCTTATGATGCCTGCTGGGAATGCTGGGAGTGGAGCCGGGAATGGTGGACCAGCAGAGGTAGCTGAAGAGAGTCCATCTAAAGATGCAAAACCTGCTGGCTTCAGCAACAGAGAGAGATTCAGGACTGCGTTCAGAATGAAAGCCTACTCTCTGAGACAGAGTTCAGAtgATACGGCCGGACTGCCAGACCCCACCCCTGAGGAGAAGGGCTTCCCTCCTGACATCCTGATGGAGGAGATGATTCCCACTCTTAAATTAGTCATCAGAGCAGTCCGgATTCTGATATTCCTGTtgaataaaaagcattttaaggAGACCTTGAGGCCATATGATGTAAAGGATGTGATAGAGCAGTACTCTGCAGGACACCTGGACATGCTTTGCAGGATCAAATACCTCCAGTcacgAATAGATCTGATTTTTTCTCCTGGTCCACCTCTCActccaaaacataaaaagacCCCCAAAACACCTTTCCCCTATCCATCTCAACAGTCTCCCAGacaTGAGGCTTATCTGGCTAAAGCAGGCCTGCCAGATACTGAGGACCAAAGTCTGATGGGCAGATTTGTGCGGGTAGAGAGACAGGTGACAGACATGGAGAAGAAACTTGACTTCCTGGTGGACATGCACATGCAGTATGACCTCACAGCACCTGCCCCCATTACCATGGAACGCAGTGATGTCACTGTCAGTATCAGCGGAGACCGAGTGTACTGCACCTATGCCCCGCCTGTTCCCTACAACCAATACTATatacactcccacacactctcacacacaaacccaccCCGCCCCACTGTCCTACCCATCAGCCCACTGCCATCAGCCCACTCCCCTAATTCCCACTTTGAACTATCTGAAAGGCTGTATTTGGACCAGAGGGCAGGCACACCACTGTCATTGCTTTCTGTCACACATGAGGAGCTAGAGCGATCACCCAGTGGCTTCAGCATCTCTGCCGAGAGAGAGGAGATCACAGGCAATGGGTCAGGAGTCATGGCAAGGTTGAGCTGGGGTCATGAGTGCCAATATTTAGCAGAGGgtgagacagatacagacactgAACCTTTCACCCCAAGTGGACAGGCTCCACTGTCCTCTACTGGAGATGTGTTCCCTACAGAGGAAGTGTGGATCACCCCGCcttgatctcacacacacacacacacacatacacacaaatgcaaaggTAACAGTATATagactgctttttttaaactgcagccTCTGTAcagcacacttacacacaaagacaatattgttattaatggactatatataaatatatatcaacATGCTTTATCGCTGCAAAGCTAGGAGCACTGCATGGAATGCATGCATTTTATCTTTTTGTCTTTAGTGTTAGACATTGCACAAGTGCAGACCAAGAAGGGATTACATTAAATggaaaattctgtaaaaaagaaaaaaaaaaacgaaagaaaACTAAATGCTATGCCATTTTTGtacacttatttttatatttacaatcaTCTGTTTTTCTTCATATGCATGGACTGCATGACACTCACCTTTAAAGCAGTTAATGGTCATTATACTTTCCTATTGTTTTGCActtattttatgtttcttttgAAATGCAGAGTATTTGTTATAACTTAATTGGCTGTTTATGTAAATGTCTGTTACCATGTCACATCTTGATCATTACCAAGTGCACTTCCTTGGACGTCTCAGAGTATACATATTGTGGATTGGGGTGACTAGACCAGAGTCACCCCAATGCTGCTTTGTCCACATGACTTTAGTCCAGCTACTTACCTTGGAATCTGTACCGTGGTTGATTGACTTTCACAGCTTTCACAACTGCCAGCTCAAAGAATGTTAGTTCTGTAATCCACAGTTAGCACACAGTTAGAGTCCACATCATCCAAACAAATAATTTCAGGTTGTTGACACTGAGTGTGGTCACTTTTAGCCACTCCATTAGCTTTGAcgtatattattatatgaagGTACTCCGCCAAGTGGCCCATGCCTAATACAGCTCGAGTGGGAGCCAAACAGGGGGCATCTGACCACCTCAAGTGGCTGTGCTTGATCATTCAGAACATGTAGATGTCTTCCTATActtcctaaaaaaaattaattaaaatgatttgtagAAAGAAATTTTTATGTAAAAGTGTATAATTCTCAGTTTTTCAACTCAAAAAGACAGTACTTGCCAATAGCTCATTATTAAAAACTTAGTATGTCTCATGGACTTTGTAATGGGAtgcaaatatgaataaaaacttCTTGTATCCCCATGTGATTGCTTATGAAGTTTCTATCTGAATGTTTTTGACAATCACATGGTTTGctattagactttttttttttttaattatatccAACCAACTAATCTAAGTCAGGTTAGTTTtatgcaaaacacaaaaaagtccAACTAACTAAACCAcaccaggtgttttttttctttgtccaaAAATGGGTAACCCCTGCTGCATATATAAAGTAGtcaacatactgtatttgtgcATTCCCTTCTAAAACTATATTATCATTTTGACCTaatcttaaataataataataataataatatataaaaataataataataataaaataattttgaccTAATCTAAGCTTGTTTGGTCAAAATATCAGTTTGGCATTCAAGTCAGTCCTAGGGTAAGTGAGCATGTATTATCTTTAACAGGACTAAAAGTCTGAATACACAAAGCCAGAAAAGTCCAACTTGGACCTTTAGAGCCATGTTTTATATACTTGAACTTTATTTTGGTGATTTGCTGAATAGTTAAAGCAGGGAACATGATATAATGCAGAAATGTGGCCCCATAGAAAGACTTTTGGACTGCAAACTTCATGGTGCCCAATATTCAAGATGTGCACTAAAATACGCAGGAAGAGCTTCAATGTTTATTCTCTTGCTATTATCAGAATTACATTAAACAATAGtgtcaaatatgaaaaaagaaaaaatgacttttttttaaaaattctaaatcaATACAGTTATTGATATTTATGATGTATGAATAAGTTGATAACATGTTGTTTGTAAACCTAACACTCAGTATATCAAAGCTTTACAGAGATGCTTTCTTTGACTtataacctttttttctgaatatagaaaatatgAATGATCATTTCTGAATGCTTAACATCCTTTCCTTTTACTCTGaccattcttttttctttctttctttctttctttctttctttctttctttctttctttttttttttctttctttctttctttctttctttctttcttaacatgcatgtgtgtgtgtgtgtgtgtgtgtgtgcgttttaaTGGATTTTGATAACTCACACATTGACCACACTCATGTACTGTAAACTCACAAACAGCCTGCCATCAGTGACTAATGACTGCTATTCATTATTTGTGCCTTGCCATTTGGGCGTACAGGTTCCTTATAGCCACATATTTTGTTTGTGAATAAACCAGCCAGTCATCCAATTGCTCTACAAAATATACATTTGTTTTACTAGGCCCCAGCCaatcacatttttccattttttaatttgcagaTTAGATGCGTTCACACTAGTGGCCTTCTGAGCTATTCATTCcaggtttttaaataataaactttttatttatatcctgGTCTTGACCAGTTTAATAGCTTGACTTACAGAAACAATGTGCAGATGTCTTaattttttatgttacattgcaccagttattaataaaaatgtatccaATTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04928 KCNQ3, KV7.3; potassium voltage-gated channel KQT-like subfamily member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374778 lncRNA upstream 126941 7756763 ~ 7756954 (+) False fitm1
TU374758 lncRNA upstream 154158 7703722 ~ 7729737 (+) False G316419
TU375004 lncRNA downstream 109400 8044493 ~ 8044697 (+) True G316630
TU375122 lncRNA downstream 323736 8258829 ~ 8259070 (+) True G316741
TU375123 lncRNA downstream 324165 8259258 ~ 8261708 (+) False LOC113543009
TU375124 lncRNA downstream 324165 8259258 ~ 8261631 (+) False LOC113543009
TU375125 lncRNA downstream 324165 8259258 ~ 8261708 (+) False LOC113543009
XM_026941263.2 mRNA upstream 2178 7859024 ~ 7881717 (+) True lrrc6
XM_026941267.2 mRNA upstream 126934 7751694 ~ 7756961 (+) True fitm1
XM_026941265.2 mRNA upstream 271111 7603361 ~ 7612784 (+) True trnau1apb
XM_026941261.2 mRNA upstream 285731 7582313 ~ 7598164 (+) True crsp7
XM_026941352.2 mRNA upstream 308515 7568466 ~ 7575380 (+) True LOC113543252
XM_034297703.1 mRNA downstream 5985 7941078 ~ 7953336 (+) True LOC113543381
XM_034314657.1 mRNA downstream 21950 7957043 ~ 7973996 (+) True oc90
XM_026941417.2 mRNA downstream 135472 8070565 ~ 8130482 (+) True adcy8
XM_026941416.2 mRNA downstream 136339 8071432 ~ 8130482 (+) False adcy8
XM_026941173.2 mRNA downstream 258662 8193755 ~ 8257661 (+) True myo10
TU374748 other upstream 187976 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 748394 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 939287 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1656655 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1987065 5894504 ~ 5896830 (+) False shox2
TU375134 other downstream 328246 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 333616 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 876864 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1477230 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 2024236 9959329 ~ 9977901 (+) False pip4p1a