RNA id: XM_026941263.2


Basic Information

Item Value
RNA id XM_026941263.2
length 4330
RNA type mRNA
GC content 0.41
exon number 12
gene id lrrc6
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7859024 ~ 7881717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTGTGAAAAACAGttcaaatcaacaaatcaattAGCCGCTACAACTACACGCGCCTGCTCTCTTCTTCTTTGGGGTTTTACGTCGATTCAGGAGTTGGGCGCATTACCGCCACCAACTGAGCTGGAGTGTGGGGCCGGCATGAATCAATCTCTCtcccttccctccctctctgcaTTTACAGCGTTCACTAGACGAGCCTATCAAGAGGGACTTACACAAGGGCTTGAACTGAAAACTTCAGTGGGATATTTTGaaattagctgcattaaaaGGCGGCGATAAACaccactgaaaaacacacagaaagccGAGCCTATTTCGTACTTCCGCAATACACGTTCCCATAGTAACGCTTCACAAACTCAAGCATGGTGCGCATCAGTGAAGATCTCATCCGCCGTCGTGCTGAGCACAACAACTGTGAGATCTTTTCTCTGGAGGAGATTTCATTACATCAGCAGGACATTGAACGTATAGAGTACATTGACAGGTGGTGCCGAGACCTGAAAATCCTCTATTTGCAAAACAACCTAATTTCCAAGATAGagAATGTTGGTAGACTGAAGAAGTTGGAGTATCTGAATCTGGCACTGAATAACATTGAAGTGATTGAAAATTTGGAAGGTTGCGAAGATCTTCAGAAGCTTGACCTGACTGTGAATTTTGTTGGTCGATTGAGCAGTGTGGAGTCTCTGAAACAGAATGTGCACCTCCGGGAGCTTTTTCTTGTGGGAAATCCCTGCACTGAGTTTAAGGGTTACAGGCAGTATGTGCTGGCCTGCCTGCCTCAACTTCAGTGGCTAGATGGCACAGCAATAGGGCGAGCAGAACGGATACAGGCACTGCAAAACTTTGATGACTTGAAGAAGTGTGTCTTAGAACAAGAGGCTGAATATgtggaaaggagagagaaacagaagaggGAGGGGCTAAAAGAAAACTCAAGCAGCAACCCACAAGATTTAGATCACAAGCGTCTCCCGAGGAACGACTCTCAGATAACCAAGGAGAACACGAACCAAGACCCAAATCTTGAGTGCCATCCAAATCAGAATTCAAACTCAGAGGATGAGGAGAATGATTTTTGGGAAAAGCCATGTGCCTTTACTCCAGAGTCAAGACTGGAGGCACATCGCCATctagaggagaagaggagaacaAAAGAGAGACTGAGagAGCCAAAGAGGAAGGATAAACCTCCCAGAACTCTGATCACATCTGATGGAAGAGTGCTGAACATGAATGAACCAAAGTTGGATTTTACTCTaagtgaagatgaagaaaacaaCTGTGTACTTTTGGATCTGCATGTATACAGGCATTTGGACACCTCTTTGCTGCATGTGGATATTCAGCCTACATACGTGAGGGTGACTGTCAAAGGAAAGGTGTTCCAGTTGGTTTTGCCTGATGAGGTTAAACCAGATAGCAGCACAGCTCAGAGATCTCAAACTACTGGCCACCTGCTTATCACCATGCTCAAGttgcATGGAGaggtaaaagtaaaaaaagcaaCTCATAAACTGACCAATGGTTCCTGCAGAGGAAATGGGACTTCAGAGACCTCAAAGGAAAAGGGCAGGGCGATCTCTGGTTGTCAGAGATTAGAAGTTGACCCCAGCAAAAGCTTTGCTGTACAACTGGCCAACATTGTCCCTAAAGAAGACCACACTACCCATGGTCCCCTGCAGCTCTCCTGGCCCTGTAGAGCCCAAGAGAAGCCTGTGTCCAAAGACTTTGTGGATGACCCCGAAGTGCCCCCCTCTCATGTGAGAAACACAAAGAATGGAAGAATGTGAGAGAATACATGTACAACTGTGAAAATACAGTACATGACAGCAGTTATAAATTACAGTTTTGGGGaattttgttattcttttggATGCATGTGAAGATATGGACTTCACAGGGTGTTCTTGGGTTTCTTCCtatcttttactttttattgaATATTCGTATAATTGTGTTTACATGTACCAAGCCTAGAGTGAAATGTACTCCAGTTTTGTTCATTCGAGTTTGTAATTCAGATGTCTCCAGCATTGTTAGTATTCATTCACACAAGGATCAGAATAGGTGTGAGGTGCACATGTATAGTGATAGAATGGAAGCCCATTTGTTCACAGATATGAAATCCaatagcattttattatatcaAAGATGCACACCAGAAGTGGATATTCCTTCTCTAGTGAATTCACACCAGTGGGCAGAAATCACTTGAAATTTATTTTGTTCACACTCTAAAATgcagattggaattggattgaGACAGTCCAGCTGCTCCACTTTAGGTTTACACCGGGTTTACAGTTTTGCTGTACTTTTTCTGGGCCAGAGGGATAAGGgtcagatgaataaaacatgacattgtCACTGAGCAGTCAGCCAATTTGAATTATTTACACTCATCTTCCCAATTCCCCATTCCATGGCTGTGGAATGAAAATCGGATCTGaactgaggtgtttttttttttttttaatatgtttattttactttgtcTCTTATGATTTCTGGATTTCATCCCTACTTCCCACACATCTCAAACAATTTTACCTTCCCTATCCTGAGACATACTGTGTAACCATCAATACACTGTGGGATCTGTGCCCTGTGCTCTGCCTAGGCCATGTTGTGCCTAGCTAAACTCCCCTTCCTGTGCACACATATAGTACATACACACCAAGTTCCAGTCAGTAACCCTCAGATGTCTCTGATGAGACAAATGTGAATTGCACAGACCAGTCAACCTTTGCAGTGTGAGTAAAGCcagagcactgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtggtgacctCATCTTGCCTTGTGTTAGAACCACACCCACTTTGAGAGCAGTGAGATATTCCCACAGCAGAGACTGTACATTCTCTCTCCGTGTAGTGTGTTTGCTAGAATACCCCCATCTActttgatatatgatatatgaaaCAAATGACATGTTACACTCAGGCAGTGTGTAAATTATCATCAAATATTGATGAAatcttcctctctctgcctctcccacacccaaatgcacacaaacacaaacaatctctctctctctctctctctctctctcactcacactcacacacacacacacacacacaaacacgcacgtGCTCTGCTGCAGCCAGTCAGTCTGTGAGAGTAAAAGGCTAGTCCCTATAGACATATACAGGAGTAGAGGAGGATGGAAAATAAGAGTGAAGGATAGAGTAAAGAACGCAGGCAGCACAATAATATACACTTatcatttaatatcattttaggTGATTGTATATTATTAGAAAAATCAGGAGCATCCAAATATTAAAGTTACTCATAAAATGCAAATCCAACCACTTACAAGAACCAACATGAAATAAAGTGAATTACTGTGTGATATCTGTGTACTATAATGCACTTGACTGACTGTATTGaatttttcttcagaaaattgTATATacctataatttttttttttggattgcaTGTATTTGTGCCTCCTGGGTCTCCTTCTCCTCGTGCTTGTTTCTTTTACAAGTAGCTTTCACAGGGAGGAGCGCCATGCCTAATTAtctaaaaaatcatttatttgacAAAATTTGATACATGGCATTATAGAGTGCTAAGCAACATGATGTTAGTCAGATCATTTAATTCCACAGCTGCTCCTGACATCACAGAACAGGTCAGTACAGCTTCAAACGAGGCAAACCTACATGTtgtttcacttcactttttcaTCTGTGTTAATGATTTCCCCAAATGGAAAGAGAGTGGAGAGGGGAACTCTGGGGAGTGAATAGAGTAACACAGTGGAAGAGAACTAAGGATACATGTGTAGGCCAGCACTGTTTGGGGTATGTTTTGgatgtattacatttttttttttgctagtgaTTGAATTTCCTagttttgtgcttttatttggTAATCTTAACCAAAACCCACACAGTGATGGGTGGGTCTCAATTCTTTCATGACCGCCTGTGATGGGGAAACAGTATCTTTTATGTGTCACATGGAGTTCTCCACATTAATATCACGGAAATATGATTAAACAGCTGCTTAATTGAAGTATAATTTGGTTACCAGACATTAGATTTTCTGTATTCTTTCTTTGTCTGGTTTGGCATTAAAATGATATCAGTGATatgttttctgattattttaattaaataatgatattttaaacTAGAACATATTTTGCTTTCATGGTCAAATGCATAGCAGTTAACGGTTCCCCTGACTTAAGAAATACACTGTctaattttgaaatgaaattactTTTCAATAAATCAATGCGAAA

Function

GO:

id name namespace
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0048793 pronephros development biological_process
GO:0003146 heart jogging biological_process
GO:0044458 motile cilium assembly biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060294 cilium movement involved in cell motility biological_process
GO:0001947 heart looping biological_process
GO:0042995 cell projection cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K19753 LRRC6; protein TilB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374778 lncRNA upstream 102070 7756763 ~ 7756954 (+) False fitm1
TU374758 lncRNA upstream 129287 7703722 ~ 7729737 (+) False G316419
TU374761 lncRNA upstream 129287 7703722 ~ 7729737 (+) False G316419
TU374760 lncRNA upstream 131922 7706377 ~ 7727102 (+) False G316419
TU374756 lncRNA upstream 149718 7703722 ~ 7709306 (+) False G316419
TU375004 lncRNA downstream 162776 8044493 ~ 8044697 (+) True G316630
TU375122 lncRNA downstream 377112 8258829 ~ 8259070 (+) True G316741
TU375123 lncRNA downstream 377541 8259258 ~ 8261708 (+) False LOC113543009
TU375124 lncRNA downstream 377541 8259258 ~ 8261631 (+) False LOC113543009
TU375125 lncRNA downstream 377541 8259258 ~ 8261708 (+) False LOC113543009
XM_026941267.2 mRNA upstream 102063 7751694 ~ 7756961 (+) True fitm1
XM_026941265.2 mRNA upstream 246240 7603361 ~ 7612784 (+) True trnau1apb
XM_026941261.2 mRNA upstream 260860 7582313 ~ 7598164 (+) True crsp7
XM_026941351.2 mRNA upstream 283644 7568121 ~ 7575380 (+) False LOC113543252
XM_034297738.1 mRNA downstream 2178 7883895 ~ 7935093 (+) True kcnq3
XM_026941259.2 mRNA downstream 2178 7883895 ~ 7935093 (+) False kcnq3
XM_034297739.1 mRNA downstream 2178 7883895 ~ 7935093 (+) False kcnq3
XM_034297703.1 mRNA downstream 59361 7941078 ~ 7953336 (+) True LOC113543381
XM_034314657.1 mRNA downstream 75326 7957043 ~ 7973996 (+) True oc90
TU374748 other upstream 163105 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 723523 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 914416 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1631784 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1962194 5894504 ~ 5896830 (+) False shox2
TU375134 other downstream 381622 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 386992 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 930240 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1530606 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 2077612 9959329 ~ 9977901 (+) False pip4p1a

Expression Profile