Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941265.2 |
| length | 1206 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 9 |
| gene id | trnau1apb |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 7603361 ~ 7612784 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K25102 | TRNAU1AP; tRNA selenocysteine 1-associated protein 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU374677 | lncRNA | upstream | 12441 | 7582332 ~ 7590920 (+) | False | crsp7 |
| TU374657 | lncRNA | upstream | 35293 | 7565086 ~ 7568068 (+) | True | G316339 |
| TU374659 | lncRNA | upstream | 35293 | 7565086 ~ 7568068 (+) | False | G316339 |
| TU374628 | lncRNA | upstream | 97957 | 7505079 ~ 7505404 (+) | True | G316317 |
| TU374593 | lncRNA | upstream | 169937 | 7426461 ~ 7433424 (+) | True | G316288 |
| XR_004580345.1 | lncRNA | downstream | 35920 | 7648704 ~ 7650020 (+) | True | LOC117599993 |
| TU374729 | lncRNA | downstream | 57547 | 7670331 ~ 7670559 (+) | True | G316396 |
| TU374730 | lncRNA | downstream | 58506 | 7671290 ~ 7671520 (+) | True | G316397 |
| TU374731 | lncRNA | downstream | 58788 | 7671572 ~ 7671859 (+) | True | G316398 |
| TU374738 | lncRNA | downstream | 76593 | 7689377 ~ 7689965 (+) | True | G316405 |
| XM_026941261.2 | mRNA | upstream | 5197 | 7582313 ~ 7598164 (+) | True | crsp7 |
| XM_026941351.2 | mRNA | upstream | 27981 | 7568121 ~ 7575380 (+) | False | LOC113543252 |
| XM_026941352.2 | mRNA | upstream | 27981 | 7568466 ~ 7575380 (+) | True | LOC113543252 |
| XM_026941350.2 | mRNA | upstream | 27981 | 7572897 ~ 7575380 (+) | False | LOC113543252 |
| XM_026941284.2 | mRNA | upstream | 48436 | 7553561 ~ 7554925 (+) | True | foxl2a |
| XM_026941267.2 | mRNA | downstream | 138910 | 7751694 ~ 7756961 (+) | True | fitm1 |
| XM_026941263.2 | mRNA | downstream | 246240 | 7859024 ~ 7881717 (+) | True | lrrc6 |
| XM_034297738.1 | mRNA | downstream | 271111 | 7883895 ~ 7935093 (+) | True | kcnq3 |
| XM_026941259.2 | mRNA | downstream | 271111 | 7883895 ~ 7935093 (+) | False | kcnq3 |
| XM_034297739.1 | mRNA | downstream | 271111 | 7883895 ~ 7935093 (+) | False | kcnq3 |
| TU374286 | other | upstream | 467860 | 7133459 ~ 7135501 (+) | True | G316001 |
| XR_004580329.1 | other | upstream | 658753 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU373737 | other | upstream | 1376121 | 6226717 ~ 6227240 (+) | True | G315581 |
| TU373444 | other | upstream | 1706531 | 5894504 ~ 5896830 (+) | False | shox2 |
| trnat-agu_13 | other | upstream | 2383743 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
| TU374748 | other | downstream | 82750 | 7695534 ~ 7695919 (+) | True | G316413 |
| TU375134 | other | downstream | 650555 | 8263339 ~ 8264061 (+) | True | G316744 |
| TU375135 | other | downstream | 655925 | 8268709 ~ 8269198 (+) | True | G316745 |
| TU375607 | other | downstream | 1199173 | 8811957 ~ 8812820 (+) | False | LOC117599964 |
| TU375892 | other | downstream | 1799539 | 9412323 ~ 9415164 (+) | True | G317390 |
