Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941277.2 |
| length | 1181 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | pmvk |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 3813253 ~ 3816854 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006695 | cholesterol biosynthetic process | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004631 | phosphomevalonate kinase activity | molecular_function |
| id | description |
|---|---|
| K13273 | PMVK; phosphomevalonate kinase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU371923 | lncRNA | upstream | 4563 | 3807148 ~ 3808690 (+) | True | G313975 |
| TU371775 | lncRNA | upstream | 288735 | 3524309 ~ 3524518 (+) | True | G313853 |
| TU371743 | lncRNA | upstream | 323954 | 3481100 ~ 3489299 (+) | False | LOC113543208 |
| TU371707 | lncRNA | upstream | 513947 | 3299098 ~ 3299306 (+) | True | G313796 |
| TU371493 | lncRNA | upstream | 736883 | 3076049 ~ 3076370 (+) | True | G313607 |
| TU371944 | lncRNA | downstream | 29003 | 3845857 ~ 3846095 (+) | True | G313990 |
| XR_004580328.1 | lncRNA | downstream | 71173 | 3888027 ~ 3895685 (+) | True | LOC117599982 |
| TU372207 | lncRNA | downstream | 179648 | 3996502 ~ 4000314 (+) | True | G314222 |
| TU372364 | lncRNA | downstream | 473400 | 4290254 ~ 4293729 (+) | True | G314362 |
| TU372366 | lncRNA | downstream | 478011 | 4294865 ~ 4295074 (+) | True | G314364 |
| XM_026941244.2 | mRNA | upstream | 150566 | 3647747 ~ 3662687 (+) | True | nt5c3a |
| XM_026941245.2 | mRNA | upstream | 150566 | 3656034 ~ 3662687 (+) | False | nt5c3a |
| XM_034314852.1 | mRNA | upstream | 166581 | 3642315 ~ 3646672 (+) | True | LOC113543357 |
| XM_026941367.2 | mRNA | upstream | 290040 | 3502067 ~ 3523213 (+) | True | atg5 |
| XM_026941285.2 | mRNA | upstream | 323886 | 3423567 ~ 3489367 (+) | False | LOC113543208 |
| XM_026940992.2 | mRNA | downstream | 145901 | 3962755 ~ 3968351 (+) | False | tagln |
| XM_026940991.2 | mRNA | downstream | 145901 | 3962755 ~ 3968351 (+) | False | tagln |
| XM_026940989.2 | mRNA | downstream | 145902 | 3962756 ~ 3968351 (+) | True | tagln |
| XM_026940990.2 | mRNA | downstream | 145903 | 3962757 ~ 3968351 (+) | False | tagln |
| XM_034314876.1 | mRNA | downstream | 357939 | 4174793 ~ 4183429 (+) | True | LOC113543359 |
| trnas-aga_16 | other | upstream | 185140 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnas-aga_14 | other | upstream | 187223 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_13 | other | upstream | 187756 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| trnat-agu_12 | other | upstream | 923865 | 2889315 ~ 2889388 (+) | True | trnat-agu_12 |
| TU371294 | other | upstream | 1137405 | 2675322 ~ 2675848 (+) | False | G313445 |
| trnap-ugg_21 | other | downstream | 130081 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
| XR_004580320.1 | other | downstream | 775586 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
| TU372694 | other | downstream | 1120194 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372695 | other | downstream | 1120194 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372696 | other | downstream | 1120194 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
