RNA id: XM_026941278.2


Basic Information

Item Value
RNA id XM_026941278.2
length 2127
RNA type mRNA
GC content 0.59
exon number 3
gene id xkr4
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2069361 ~ 2116180 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggaggaagaggCGAGCGTAAGGTTTCGCAGGCGCTCCGGAAAAAAAGGAAGCGGCGCTTTGTGATGCGCAGGCGGCGCCGTGTAGCTGGCGGAAGAGGAGCTCTCGCAGCCCAGCCCCAGCGTCTCTCCGCCCAGGGGAAAGACAGGAGGCAGACAGGAGGGACGtggggggaagaaaaaaagacagagggagagggagagagagagaagaagaagaagaaggaagagaaaagaaaaaggaggggaaaaacGGGAACGGCGTTGACGAAGCCGCTGCGATGGCGGCCAAATCGGACGGCgtgctgaagatgaagaagagcgATGTGGCGTTCACGCCCCTGCAGAACTCGGACCACTCGGGCTCGGTGCCGGGGCTCGCGGCGGGATCGCGACCGGGCTCGGGCAGCGGCGAGGCGGATTTTACGCGCGGTGAGGCGCGCTGCTGCGGTCCCGAGGACTCGACGTGCCTGCGGCTCGGCGGAGAGAGGCGGAAGTACGGCGCCTGGGACGGTCTGTGGCTGGTGGCCGCGGCCGCCGTGTACTTCACCGACGTCGCCACGGACGTGTGGCTCGCCGTCGACTACTACCTGCGCCGCGACTACTGGTGGTTCGGCCTGACGCTCTTCTTCGTGGCGCTCGGCTCCATCTCCGTGCAGGTCTTCAGCTTCCGGTGGTTCGTGCACGACTTCAGCACCTCGGAGAGCGACGCCGCGGCCAccgacagcagcagcaggactAACGAGAAGCGCTCGGCGCCGTGCGCCTTCTGCCTCTGGTTCTTACAGTCCGTCATTCACATCCTGCAGCTCGGCCAGATATGGAGGTATTTCCGCACCATCTACCTGGGCATCCGGAGCAGGCGCAGCGGCGAGAATGACCGCTGGAGGTTCTACTGGAGGATGGTGTACGAGTACGCTGATGTCAGCATGCTCCACCTGCTCGCCACCTTCCTGGAGAGCGCGCCTCAGCTCGTCCTGCAGCTCTGCATCATCATCCAGACTCACAAGCTTCAGGCCGTGCAAGGAATGACTGCCGCTGCCTCTTTGGTGTCTTTGGCTTGGGCTCTGGCATCCTACCAGAAGGCTTTACGGGATTCACGTGATGACAAGAAGCCCGTCAGCTACCTGGCCGTCATCATCCAATTCTGCTGGCACTTCTTCACCATCGCGGCACGTGTCGTGACCTTTGCCCTGTTTGCCTCCGTGTTCCAGCTCTACTTCGGAATTTTCATTGTGCTGCATTGGTGCATCATGACCTTCTGGATCGTGCACTGCGAGACCGAGTTCTGCGTCACCAAGTGGGAGGAGATTGTCTTTGACATGGTGGTGGGGATCATCTACATCTTCAGCTGGTTCAACGTAAAGGAGGGCCGCACGCGCTGCCGCCTTTTCATCTATTACTTGGTTATCTTGTTGGAAAACGCAGCACTCAGCGCACTCTGGTACCTGTACCGCTCACCGCTGGGCACCGACGCCTTCGCCGTTCCTGCCCTGTGTGTCATCTTTTCCAGCTTCTTCACAGGAATTGTCTTCATGCTCATGTACTACGCTTTTTTCCATCCTAACGGGCCACGATTTGGACGCTCAGCCAGCCTGAGCCAGCTGGATGATACCAACATCACTACCGGCTTCGCCATGCCAACCGAAGGTGCCACCAATTCCCTTCGCTCCAACAGGGGTGGCACACTGGCAAGGGACGCTGATCGCGATGCTAAGTACACCGAGCGAGACGGATGTGCTCCTGTTTTTCAAGTTCGTCCCACAGCTCCATCCACACCATCCTCTCGCACTCCTCGCGTGGAGGAAACCGTGATCAGAATAGACGTATGCAGGAACCGATACCCAGCCTGGGAAAGGCACGTGCTGGACCGCGGCATACGCAGAGCCATCTTGGCTATCGCTAACTCACCCACGCCACCTCGACTGCAGTACAAGGATGACATGCTCGTCCAGGAGCGGCTGGAGTATGAGACCACGTTGTAGCTCACCCACTTTTCCACAGCTTGGTGTGTGGAATCTTGTAGGTTATCATCCATTAACAGCAGGACTGTGGCAATAACATGACTAGCAGAGTGGGACTGTCAAGCCCATAGCATTTAGCCATGATGTTGATTGTCAtggattgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370836 lncRNA upstream 92646 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 174414 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 428635 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 432638 1624563 ~ 1636723 (+) False LOC113543035
XR_004580344.1 lncRNA upstream 437954 1624563 ~ 1631407 (+) False LOC113543035
TU370833 lncRNA downstream 144 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 558253 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 615035 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 618939 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 673062 2789242 ~ 2789496 (+) True G313494
XM_026941293.2 mRNA upstream 9344 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA upstream 9344 2043248 ~ 2060017 (+) True LOC113543213
XM_034314865.1 mRNA upstream 51195 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA upstream 51195 1995611 ~ 2018166 (+) False zgc:163121
XM_026941180.2 mRNA upstream 93007 1965740 ~ 1976354 (+) False c21h5orf22
XM_026941306.2 mRNA downstream 16970 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA downstream 17033 2133213 ~ 2145237 (+) True tgs1
XM_026941059.2 mRNA downstream 31095 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA downstream 31095 2147275 ~ 2168213 (+) False lyn
XM_026941061.2 mRNA downstream 52868 2169048 ~ 2176365 (+) True urod
XR_003404390.2 other upstream 92052 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 933341 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 937678 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1230839 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1756633 275159 ~ 312728 (+) False snap91a
XR_003404395.2 other downstream 17034 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 65799 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 378052 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 539020 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 539020 2655200 ~ 2662399 (+) False LOC117599997

Expression Profile