RNA id: TCONS_00008051


Basic Information

Item Value
RNA id TCONS_00008051
length 1278
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_004204
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30355442 ~ 30364847 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTTTTATCTTACAATATTATACTCTGGTTGTTTCGCTGTCGTAGTCAACATGGCAGCGTCCAGTGTTTTTAAAGCAGGTCTTTTCAATCACAAAGTCGCAGTCGTGACGGGTGGCGGGACTGGCATTGGAAAAGCCATCACTTCTGAGCTCTTACAGTTAGGATGCAGTGTGGTTATATCGTCCAGGAAGCTGGAGCGTCTGAAGTCAGCAGCGGAAGAGCTGACACTGAAAATCCCTTCATCCAGTCCAGCTAAAGTGACCCCTATAGAATGCAACATCCGCAATGAAGATGAGGTGAAGAACCTGATGGCCTCTACACTAAAGCTTCACGGGAGAATCGACTTTTTGGTGAATAATGGAGGTGGCCAGTTTTCCAGTCCGGCAAACATGATGAGTGCAAAAGGCTGGAAGGCTGTGATCGACACCAACCTCAATGGAACGTTCTTATGCTGCAGAGAAGCATATAATGCCTGGATGAAGGACCATGGAGGTGTAATCGTGAATATCATTGCTGACATGTGGAAAGGCTTTCCTGGAATGGCGCACACAGGAGCAGCTCGAGCAGCGGTGGACAACCTGACCAAGAGTTTGGCCATAGAGTGGGCTCACAGTGGGGTCCGCATAAACTCTGTGGCGCCGGGAACAATCATCTCCAAAACTGCTATGGAAAACTACAAAGAATATGGGCCTACTTTGTTTAAGATGTCAGTGCCATTCAGTCCTGCTAAAAGACTCGGTGTTCCTGAGGAGATATCTCCGGCTGTGTGTTTCCTGCTGTCTCCGGCTGCCAACTATATTACTGGAGCAACCCTGAAGGTGGATGCAGGACAGAGCCTTTACCACTCCATCTGGGAAATCCCAGAACACGATGCCTGGCCTGAAGCTCCAGAGGGAGAAAATACAGACGTGCTGAGAGAAATCATGGACAAGACTAAATCCAAGCTGTGAATCAGAGGAAAACAAGTCTAGACTGTCAAAACAGCTGCTCTTCATCAATGTGGGTGGAAGACAAATGCTTTTGCTCGGAATTGTAACACGTCTCGACTGTGGCCTTTGGAGTGAATCTCACTGAATATTTTATTGCGTAATTGAGCTCTAATAGTTCATAAGGAactgtgtaaatatgtgtaataATATGGTATTGTGAATTTAACAATTGTGATTAATATTTCCAAAAATAACTTTGATCAGCCATCATTGTAAGattacaaatatgtaatgtatttttaaaaaatacattttttgttgtgacAACTTTTAAACAAATTCATTAGT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0033306 phytol metabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity molecular_function

KEGG:

id description
ko04146 Peroxisome
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-050417-232 Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in phytol metabolic process. Predicted to be active in peroxisome. Orthologous to human PECR (peroxisomal trans-2-enoyl-CoA reductase).

Ensembl:

ensembl_id ENSDART00000078387

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008040 lncRNA downstream 393541 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 434440 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008027 lncRNA downstream 593431 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 618195 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008023 lncRNA downstream 697572 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008812 lncRNA upstream 835372 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008813 lncRNA upstream 840078 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008814 lncRNA upstream 1785371 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 1790107 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 2001065 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008050 mRNA downstream 3109 30348273 ~ 30352333 (-) True XLOC_004203
TCONS_00008049 mRNA downstream 14011 30332959 ~ 30341431 (-) True XLOC_004202
TCONS_00008046 mRNA downstream 196833 30107447 ~ 30158609 (-) False XLOC_004201
TCONS_00008045 mRNA downstream 197219 30106182 ~ 30158223 (-) False XLOC_004201
TCONS_00008047 mRNA downstream 197251 30151238 ~ 30158191 (-) False XLOC_004201
TCONS_00008054 mRNA upstream 821 30365668 ~ 30508843 (-) False XLOC_004205
TCONS_00008055 mRNA upstream 2791 30367638 ~ 30508851 (-) False XLOC_004205
TCONS_00008057 mRNA upstream 171096 30535943 ~ 30611814 (-) False XLOC_004206
TCONS_00008058 mRNA upstream 171698 30536545 ~ 30601401 (-) False XLOC_004206
TCONS_00008059 mRNA upstream 171698 30536545 ~ 30601494 (-) False XLOC_004206
TCONS_00008048 other downstream 199607 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 254185 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008039 other downstream 408802 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008033 other downstream 445817 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008030 other downstream 539240 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008056 other upstream 59379 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008067 other upstream 805502 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008075 other upstream 2366318 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 3006404 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 3601311 33966158 ~ 33966272 (-) True XLOC_004234

Expression Profile

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