RNA id: XM_026941293.2


Basic Information

Item Value
RNA id XM_026941293.2
length 3615
RNA type mRNA
GC content 0.55
exon number 23
gene id LOC113543213
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2042200 ~ 2060017 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCTCACCTCCAGAAGATGGCGGTAATTAACACAAACGCACTTTACTGTGGACCTTACTGGCCACCGTACTGTGTACAAACCCGAGAGCTAGCTGACTAGCCACATTGAAGTGCGCAGCAATGACGCTGTCAGAAGAGTTGGAGGAGGTGAGGAGCCGGGCCGAGGCGAGTTTATCCAGACccggctctgtgcaggacatcAGGAACAACGTGTCCGCTGTGGCCAACATCTCACTGCCTCCGTCGGCTAAATATCGTTACATTGCCGCAGAGACCATGCTGATAGAAAACAGTGCTGGAAGCAACAAGAAAGAGgcGATAGCGTCACTGCAGAAACTGTCCACAGCGCTCAACATCCTGGAGAAGTACGGCTCCAACCTGACCAGCCCCAGCAGACCCAAGTACTGGCGCACGGTGAAACACAACAACCCGGTGTTCAGGGCCACAGTGGACGCTGTTCACGGTGGGCGGGCCGTCCTGTACCTTTACGGCTACACCAATCAGCAGCCAGACGGACTGAGCTTTCCCGATGAAATCACAGAGCCGGACGTTGCCAAAGTGGCTTCGGTGACGCTGGAGGTCATGAGTCTGCGCATAGAGCTGGACATGCTCATCAAGGACACCCATCCTCACCCAGAGTTCTTTGAGAGAATCATCCCCTCTCTCACTCAGAAGGATGATGATAATGGACTGAGCTCAGACGCTGTAGTAATATCTCCATCCAGTGAGAGGCCGTGGGAGAAGCTCTCCCTGCCCACGCTGTCTCCGTCTCAGCCCAAAGGactgctgtctctctcctccatcacaCCCGCCAAGCCAACAGCTGTCTGTGAGGAGAACTGCAGCATATGTGGGATCTTCCCCGTGACCTCCCACTGCACCACATGCTCCCAGCGTCTGTGTTTAGAGTGCGACCGACTCTACCACTCACACCCAGCTCGCGCCACACACACCAGGATCCCAGTGGCGACCCCCAGAACCTCCAAATCTCTCAGTGTGTCTCGGGCCACGTGGCATTGTTCGTACTGCACGACGGTGAACACAATGCAGCAGGTGTTGTGTAGTACCTGTGAGCGCCCTCGTCTGGCTGCAGCTGCTCCGGTTGTACAGGAAGATCCTCCACAGCCGTCTACCATTACAGAGTGGCAGTGTAAGAGCTGCACAGTGGTGAACTCTGGCAGCAGTAtcctgtgtgaggtgtgtgagcgCCCCCGTCTGGCCACACGCCCTCCTGTGACTCCTTCGCGACCCACGCCAGCTCCTGCAGGACTGTTCGACACCGGGCAGTGGATCTGTCAGTTCTGTACTTACGCCAACCACACGCCGTCATCCCGCTGCGAAATGTGCGACCTGGCGAGATCAGACCCCGCCCCGTCGCCTTCTAAACCCCTCCCACCCTCCCCGATTAAGGACTTCGAGCCGAAAAGTCCGCCGGTGGAGGATCCCGATTTGAAGAGGCAGAGATTAATGCGGGAGGAAGGGCTTAAACTGATCAAGCTGATCCGAGAGGGTGAGATGAAGGGCGTGAGCCCAGAGGAAGTGTACACGAGTCTGCGGGTTTCAGGTGGCATCAGCGGAACGCCGTGTGATTGGCTGAAGACGGAGTTGCCGCACAGGCTGGACGAGATCTGTGCCATGGCTGCCTCGTTCCAGCACGAGCCTAAACCTCTCCAGACTACAGCTGCGCACCACGCCGAGCCCCAGAAGACCTCCGTGCCTATATCCAGAGCCGAGGCCAAGCAGGCCTGGCTCACAGCAGGGGGCGACAGTGAGAAAGCGGCGAGGCAGGCGCTCAGGGACCGCCTCGCTAGAgtgaaGGAGCTAGCCTCTCTTGGCTTCACTGACTCGGCCGCCTCTGAGGAGGCTTTGAGGCAGAGCGGTGGTGAGGTGAGAGGAGCTCTGGTGCTGCTgcagcgccccctgctggagcCTTTCCACAAGCGCATGTGGAGTGATGAGCCCGAACCCACCATCGACATCAACCACCCAGACAAACAGcgtgtGTGTCGCAGGCTTCTTGCCATGTACAATTTGCCCAGTTGGGGGCGCTGTGAGTTAGCCCTGTCTCTGCTGCGTGACCCCGGTGCCCCCTACACGCTGGAGGACGTGGTACAGGCCGTGCGTGAGTCACATGACCGTGACTTCATCCGTCGTGTGTTGGCGAAAGAGTGCCCTATTTGCCTGTCCTTGTTTCCCCACAGCAAGATGCAGTCTCTGACGTCGTGTCAGTGCTCTGTTTGCTGCGAATGCTTTAAGCAGCACTTCACCATCGCCGTGAGAGACAAACACATCAGGGACATGGTGTGTCCTGTGTGCTCCGAACCCGACATCAACGACCCCGAGCACCTCAACAGCTACTTCTCCACTCTGGACATCCAGCTGAGGGAGTGCCTGGAGCCAGAGGTCTATGATCTTTTCCATAAGAAGCTGACTGAACAGGCTCTCATCAAGGACCCAAAGTTCCTGTGGTGCAGCCATTGCTCATACGGTTTCATCTACGACGGAGATCAGCTCAAGGTCACCTGTCTGCAGTGCCGGAACAGCTTCTGCGCTCAGTGCAAGAAAGCCtGGGAGGCTCAGCATGCTGGCCTGTCGTGTGAACAGTTCCAGTTGTGGAAGCGTGAGAATGATCCAGAGTATCAGCGCCAGGGTTTGGCTGGTTACCTGCGTGACAATGGGATCAcaTGTCCTAACTGCAGGTTTCAGTATGCTCTGGCTCGTGGAGGCTGTATGCACTTCAGCTGCTCTCAGTGTCGCTATCAGTTCTGCAGCGGCTGCAACAACCCCTTCCACACGaaGTGTGCAGTGCCTCAGTGCAGTGTGACTGGTCTTCATGCTCATCACCCCAGAGACTGTCTGTTTTACCTGCGGGACTGGGAACCTGCCAGACTGCAAGCCTTattgcagAAATGCAGCGTGGCCTTTAACATTGACGTTTCTCCAGGAACACAGACAGgtgtGTGCGGTGTGATTGAGCAGAAGGATGACGGTACTCGTCAGACAGACTCAGCGTGTGGAGCTCAGACTCAGCCCGGCCAGGCGGGACTCTGCGAGAAACACTACCGCGAGTACCTGGTGAGCCTCATCAACGGCCACTCCATCGACCCCGCCCCTCTGTTCGAACCGAATGAGCTGCTCCTGGCCTGCAGGAGATACCAAGTGGAGCTCATGCAGGGGGAGGCAGAGGACGACAGGATATACTACTCTCGACTACTGAAGAAACTAATGGAAGACGTTCCTCTGGGCGACAAAGTCCCACGCAAGAAGTGAAGAATGATTTTACTCACCCTGATTTTACTCCGTGTTTTATCATTTGCGTACGCACGGCTCTGCAACCGTTCTCACCACAGCAAGGATGTCAAAGCGtagcatgttttaaaaaatggttttagATCGGCGAAGATCACAGATTTCAGCAtgatttcattttgattatGTTAGATCTCGGACAATCTCTACTGTGCACTTTGGGTTCAATAATCTTTAAGGATGAAATTCTATAATTTGTCattgattaataaatgatgTCATGCTTTCTATGCTAAAGGGATGCTTTCACCCAAAAAATGCAAATTCTATTAAAGCTATGGCAAATGTCCATCTTCCAAACGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370836 lncRNA upstream 65485 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 147253 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 401474 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 405477 1624563 ~ 1636723 (+) False LOC113543035
XR_004580344.1 lncRNA upstream 410793 1624563 ~ 1631407 (+) False LOC113543035
TU370833 lncRNA downstream 56307 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 614416 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 671198 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 675102 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 729225 2789242 ~ 2789496 (+) True G313494
XM_034314865.1 mRNA upstream 24034 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA upstream 24034 1995611 ~ 2018166 (+) False zgc:163121
XM_026941180.2 mRNA upstream 65846 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314849.1 mRNA upstream 106571 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA upstream 106571 1902301 ~ 1935629 (+) False cdh6
XM_026941278.2 mRNA downstream 9344 2069361 ~ 2116180 (+) True xkr4
XM_026941306.2 mRNA downstream 73133 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA downstream 73196 2133213 ~ 2145237 (+) True tgs1
XM_026941059.2 mRNA downstream 87258 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA downstream 87258 2147275 ~ 2168213 (+) False lyn
XR_003404390.2 other upstream 64891 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 906180 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 910517 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1203678 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1729472 275159 ~ 312728 (+) False snap91a
XR_003404395.2 other downstream 73197 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 121962 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 434215 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 595183 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 595183 2655200 ~ 2662399 (+) False LOC117599997

Expression Profile