RNA id: XM_026941294.2


Basic Information

Item Value
RNA id XM_026941294.2
length 3698
RNA type mRNA
GC content 0.54
exon number 23
gene id LOC113543213
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2042200 ~ 2060017 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACGGAAGTGAAAATCAGGCCAAAATTGCTATTGCTTTCACTTTCCGTTCACTGACAGAAAATATAAGTATTCGGAAACTAATGaacttattaattatttttaaatactagcattaattaatttaaacacaataaatagtAACAAAAGACGCCGAGATATCTGGATTCACAAGATCAAATGAAATTGCAGTAAATCCGAGGCAATGACGCTGTCAGAAGAGTTGGAGGAGGTGAGGAGCCGGGCCGAGGCGAGTTTATCCAGACccggctctgtgcaggacatcAGGAACAACGTGTCCGCTGTGGCCAACATCTCACTGCCTCCGTCGGCTAAATATCGTTACATTGCCGCAGAGACCATGCTGATAGAAAACAGTGCTGGAAGCAACAAGAAAGAGgcGATAGCGTCACTGCAGAAACTGTCCACAGCGCTCAACATCCTGGAGAAGTACGGCTCCAACCTGACCAGCCCCAGCAGACCCAAGTACTGGCGCACGGTGAAACACAACAACCCGGTGTTCAGGGCCACAGTGGACGCTGTTCACGGTGGGCGGGCCGTCCTGTACCTTTACGGCTACACCAATCAGCAGCCAGACGGACTGAGCTTTCCCGATGAAATCACAGAGCCGGACGTTGCCAAAGTGGCTTCGGTGACGCTGGAGGTCATGAGTCTGCGCATAGAGCTGGACATGCTCATCAAGGACACCCATCCTCACCCAGAGTTCTTTGAGAGAATCATCCCCTCTCTCACTCAGAAGGATGATGATAATGGACTGAGCTCAGACGCTGTAGTAATATCTCCATCCAGTGAGAGGCCGTGGGAGAAGCTCTCCCTGCCCACGCTGTCTCCGTCTCAGCCCAAAGGactgctgtctctctcctccatcacaCCCGCCAAGCCAACAGCTGTCTGTGAGGAGAACTGCAGCATATGTGGGATCTTCCCCGTGACCTCCCACTGCACCACATGCTCCCAGCGTCTGTGTTTAGAGTGCGACCGACTCTACCACTCACACCCAGCTCGCGCCACACACACCAGGATCCCAGTGGCGACCCCCAGAACCTCCAAATCTCTCAGTGTGTCTCGGGCCACGTGGCATTGTTCGTACTGCACGACGGTGAACACAATGCAGCAGGTGTTGTGTAGTACCTGTGAGCGCCCTCGTCTGGCTGCAGCTGCTCCGGTTGTACAGGAAGATCCTCCACAGCCGTCTACCATTACAGAGTGGCAGTGTAAGAGCTGCACAGTGGTGAACTCTGGCAGCAGTAtcctgtgtgaggtgtgtgagcgCCCCCGTCTGGCCACACGCCCTCCTGTGACTCCTTCGCGACCCACGCCAGCTCCTGCAGGACTGTTCGACACCGGGCAGTGGATCTGTCAGTTCTGTACTTACGCCAACCACACGCCGTCATCCCGCTGCGAAATGTGCGACCTGGCGAGATCAGACCCCGCCCCGTCGCCTTCTAAACCCCTCCCACCCTCCCCGATTAAGGACTTCGAGCCGAAAAGTCCGCCGGTGGAGGATCCCGATTTGAAGAGGCAGAGATTAATGCGGGAGGAAGGGCTTAAACTGATCAAGCTGATCCGAGAGGGTGAGATGAAGGGCGTGAGCCCAGAGGAAGTGTACACGAGTCTGCGGGTTTCAGGTGGCATCAGCGGAACGCCGTGTGATTGGCTGAAGACGGAGTTGCCGCACAGGCTGGACGAGATCTGTGCCATGGCTGCCTCGTTCCAGCACGAGCCTAAACCTCTCCAGACTACAGCTGCGCACCACGCCGAGCCCCAGAAGACCTCCGTGCCTATATCCAGAGCCGAGGCCAAGCAGGCCTGGCTCACAGCAGGGGGCGACAGTGAGAAAGCGGCGAGGCAGGCGCTCAGGGACCGCCTCGCTAGAgtgaaGGAGCTAGCCTCTCTTGGCTTCACTGACTCGGCCGCCTCTGAGGAGGCTTTGAGGCAGAGCGGTGGTGAGGTGAGAGGAGCTCTGGTGCTGCTgcagcgccccctgctggagcCTTTCCACAAGCGCATGTGGAGTGATGAGCCCGAACCCACCATCGACATCAACCACCCAGACAAACAGcgtgtGTGTCGCAGGCTTCTTGCCATGTACAATTTGCCCAGTTGGGGGCGCTGTGAGTTAGCCCTGTCTCTGCTGCGTGACCCCGGTGCCCCCTACACGCTGGAGGACGTGGTACAGGCCGTGCGTGAGTCACATGACCGTGACTTCATCCGTCGTGTGTTGGCGAAAGAGTGCCCTATTTGCCTGTCCTTGTTTCCCCACAGCAAGATGCAGTCTCTGACGTCGTGTCAGTGCTCTGTTTGCTGCGAATGCTTTAAGCAGCACTTCACCATCGCCGTGAGAGACAAACACATCAGGGACATGGTGTGTCCTGTGTGCTCCGAACCCGACATCAACGACCCCGAGCACCTCAACAGCTACTTCTCCACTCTGGACATCCAGCTGAGGGAGTGCCTGGAGCCAGAGGTCTATGATCTTTTCCATAAGAAGCTGACTGAACAGGCTCTCATCAAGGACCCAAAGTTCCTGTGGTGCAGCCATTGCTCATACGGTTTCATCTACGACGGAGATCAGCTCAAGGTCACCTGTCTGCAGTGCCGGAACAGCTTCTGCGCTCAGTGCAAGAAAGCCtGGGAGGCTCAGCATGCTGGCCTGTCGTGTGAACAGTTCCAGTTGTGGAAGCGTGAGAATGATCCAGAGTATCAGCGCCAGGGTTTGGCTGGTTACCTGCGTGACAATGGGATCAcaTGTCCTAACTGCAGGTTTCAGTATGCTCTGGCTCGTGGAGGCTGTATGCACTTCAGCTGCTCTCAGTGTCGCTATCAGTTCTGCAGCGGCTGCAACAACCCCTTCCACACGaaGTGTGCAGTGCCTCAGTGCAGTGTGACTGGTCTTCATGCTCATCACCCCAGAGACTGTCTGTTTTACCTGCGGGACTGGGAACCTGCCAGACTGCAAGCCTTattgcagAAATGCAGCGTGGCCTTTAACATTGACGTTTCTCCAGGAACACAGACAGgtgtGTGCGGTGTGATTGAGCAGAAGGATGACGGTACTCGTCAGACAGACTCAGCGTGTGGAGCTCAGACTCAGCCCGGCCAGGCGGGACTCTGCGAGAAACACTACCGCGAGTACCTGGTGAGCCTCATCAACGGCCACTCCATCGACCCCGCCCCTCTGTTCGAACCGAATGAGCTGCTCCTGGCCTGCAGGAGATACCAAGTGGAGCTCATGCAGGGGGAGGCAGAGGACGACAGGATATACTACTCTCGACTACTGAAGAAACTAATGGAAGACGTTCCTCTGGGCGACAAAGTCCCACGCAAGAAGTGAAGAATGATTTTACTCACCCTGATTTTACTCCGTGTTTTATCATTTGCGTACGCACGGCTCTGCAACCGTTCTCACCACAGCAAGGATGTCAAAGCGtagcatgttttaaaaaatggttttagATCGGCGAAGATCACAGATTTCAGCAtgatttcattttgattatGTTAGATCTCGGACAATCTCTACTGTGCACTTTGGGTTCAATAATCTTTAAGGATGAAATTCTATAATTTGTCattgattaataaatgatgTCATGCTTTCTATGCTAAAGGGATGCTTTCACCCAAAAAATGCAAATTCTATTAAAGCTATGGCAAATGTCCATCTTCCAAACGAGA

Function

GO: NA

KEGG:

id description
K11974 RNF31, HOIP; E3 ubiquitin-protein ligase RNF31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370836 lncRNA upstream 66533 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 148301 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 402522 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 406525 1624563 ~ 1636723 (+) False LOC113543035
XR_004580344.1 lncRNA upstream 411841 1624563 ~ 1631407 (+) False LOC113543035
TU370833 lncRNA downstream 56307 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 614416 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 671198 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 675102 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 729225 2789242 ~ 2789496 (+) True G313494
XM_034314865.1 mRNA upstream 25082 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA upstream 25082 1995611 ~ 2018166 (+) False zgc:163121
XM_026941180.2 mRNA upstream 66894 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314849.1 mRNA upstream 107619 1887750 ~ 1935629 (+) True cdh6
XM_026941278.2 mRNA downstream 9344 2069361 ~ 2116180 (+) True xkr4
XM_026941306.2 mRNA downstream 73133 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA downstream 73196 2133213 ~ 2145237 (+) True tgs1
XM_026941059.2 mRNA downstream 87258 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA downstream 87258 2147275 ~ 2168213 (+) False lyn
XR_003404390.2 other upstream 65939 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 907228 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 911565 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1204726 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1730520 275159 ~ 312728 (+) False snap91a
XR_003404395.2 other downstream 73197 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 121962 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 434215 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 595183 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 595183 2655200 ~ 2662399 (+) False LOC117599997

Expression Profile