RNA id: XM_026941301.2


Basic Information

Item Value
RNA id XM_026941301.2
length 1879
RNA type mRNA
GC content 0.45
exon number 2
gene id cavin4a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8800697 ~ 8802910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGGGTATGAGTCAGGCTGGTGGTTCTTTGGCAGGACAGATCTTGGTCTTTGCATCAGTCAGTCTTTCTCTCCAAGTCAAACAGGCTGGCAGATCTCCTGCCTACCAGGATAAATGCGTGGTTGAGGACTTTATCCTCACTAAACCATCAGTGGTTGTTTCCAGTGTTTGTAAGAGTTTGTTGGAAATGGAGAAGAGTAGAGACATGGTGCTGGGAATTGAGGATGAGTCTGGTCAGCCGGTGTCTCCACTGTCCATCCTGTCTCTTCTGGAACGTGTCTCCACTATCATTGATGGTGTGCAGGCCAGCCAGCAAAGAATGGAAGAACGCCAACATCAGCTAGAGGCATCTGTTGCTACAGTCCAATCAGAACTGCTCAAACTGGTCCAGAACCATGGTGCCACAGCAACCACTGTGGACAAGCTGCTGCAGAAGGCCCGGCGTGTGAGCGCTCATGTGAAGGAGGTGCGTTCACGTGTGGAGAAGCAGAATGTCCGTGTAAAGAAAGTGGAGACTGCACAGGATGAACTTCTCACCAGGAACAAGTTCAGAGTGGTTATCTACCAGGGTGAGGCTGAAGTTCCATCAGTTGCTGTGACAAAAACCCCTAAGGATGCAGGGTTGGCTAATGTTGAGGTGGAGCCTGATGAGTATGAAATACCTGCAGACCTCTCATCTGATGAGGAGTATATGGTGGTGGAAGAGGCAGAGTCATCAAGGGCAGCACGACTGAGGCAGACAGGCTTGAAAGGGATAGACAACATCAGAGCGGCTTTCTCCAAGGATAACATGAATAAGACCCGTGATCGAACACGGGAGAACCTCAGCAAGACTAAGGAGAGCCTAAGCAAGACAAGCCAGACTTTGGGCACTAAGATCAACACCCTGGGTGAGAAGATCATTCCTCTTGAGCAGCGGGAGAAGATGCGTCAGAGTGGTGAGAGGCTGAAGGAGAACATTGCCAAGAAAGCTCCCAGCAAAGAGTCCTTCCGCATCAAACTCAAGAAGGAACGTGCTGTTGCTGAGGGCCAGGAGGGTGCTGAGGCAGAGCCTGCTGTGACTCCACCAAAAGGCAGGAAGACCAGCCCAGAAGTCACCTACACAGAGGTTGTTACAGAAATCAAACGGGAAGGGCCTGTATCTGAGGAACGAGCCACCCGTATTTCAGAGGAAGGAAAGAGTGGGCTGGCCATAGAAACACCAGAGAAGTGAAGAAAACAGTGGAGAGGGATAGAGAgtgtaagagaaaaaaatcgaAGCGCTAAAGAAAAGGCATAAGAAAGtttattagaaataataaataatagaacacaatgtgcatatatgtgtggaTGTAAAAtccaaatttaaaacaaattataaCTGAGACCTCCCAGTCTAATTACCAGGATGGCAAACCTAATCAGTGAGTAATAAGGACTAGACATCATTAAGAAAGAGTCATACTGGTACAGCTGTCTGTGTGTCAATTCCATGTTTAGAAATAACTTTGAAAAACTGAGCAACTGCAcaacttattatttattaacacacaTAGGGAGTATTGCTTGTGAATTTACTGGAGTAGAAAAAGCACTAAAATATTCAGAACAGTGGCCTAACATATTTGGGAGTGGGGAACACTAGTTATAGGGCCATATTTTTTTAGAAgacctagattttttttttttttttttttttaaacaattcttAATTGGGAACATTATGTCCAGCACCTTTAAAaactctcaatctctctctctcgctccctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagtgcaTATACATTTGGAGGAGTATTTGACATGTATACTAAAAAAAGATGActtgaaataaatgaacagcTGAGCattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375589 lncRNA upstream 6753 8793714 ~ 8793944 (+) True G317113
TU375493 lncRNA upstream 69879 8726341 ~ 8730818 (+) True G317045
TU375465 lncRNA upstream 109226 8689435 ~ 8691471 (+) True G317031
TU375461 lncRNA upstream 138921 8661286 ~ 8661776 (+) True G317027
TU375442 lncRNA upstream 212486 8587995 ~ 8588211 (+) True G317008
TU375601 lncRNA downstream 2360 8805270 ~ 8805725 (+) True G317125
TU375614 lncRNA downstream 17314 8820224 ~ 8821893 (+) True G317136
XR_004580314.1 lncRNA downstream 95359 8898269 ~ 8899873 (+) True LOC117599967
TU375626 lncRNA downstream 100280 8903190 ~ 8904069 (+) True G317148
TU375617 lncRNA downstream 135808 8938718 ~ 8942335 (+) True G317139
XM_026941217.2 mRNA upstream 14039 8759168 ~ 8786658 (+) True med17
XM_026941219.2 mRNA upstream 14494 8757957 ~ 8786203 (+) False med17
XM_034297747.1 mRNA upstream 14494 8758662 ~ 8786203 (+) False med17
XM_026941220.2 mRNA upstream 14494 8759074 ~ 8786203 (+) False med17
XM_026941221.2 mRNA upstream 14494 8759121 ~ 8786203 (+) False med17
XM_034314628.1 mRNA downstream 8685 8811595 ~ 8813410 (+) True LOC117599964
XM_026941401.2 mRNA downstream 12856 8815766 ~ 8891958 (+) True urb1
XM_026941402.2 mRNA downstream 12856 8815766 ~ 8891958 (+) False urb1
XM_034314912.1 mRNA downstream 206291 9009201 ~ 9027258 (+) False LOC113543050
XM_026941010.2 mRNA downstream 217626 9020536 ~ 9027258 (+) True LOC113543050
TU375135 other upstream 531499 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 536636 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 1104778 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1665196 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1856089 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 9047 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 609413 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1156419 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1384841 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 1733521 10536431 ~ 10562994 (+) False capn10

Expression Profile