RNA id: XR_003404395.2


Basic Information

Item Value
RNA id XR_003404395.2
length 2639
RNA type misc_RNA
GC content 0.52
exon number 12
gene id tgs1
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2133150 ~ 2145237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTCCCAGAATTCCTTGCTCGGTTTTGTCGCCGCTTCTGAACATGTGAGAGTCTGTAACACTGATTATTTcagctgtttgttttcttcttacGCTATTTTGAGctgtatttgtaatatttctCCGCGAGGTGATGACGTCAGGCCGGCGTTAATGAagagtgtgttctgattggctgctctgGAATCCGCTCATTAGGAAGCTCATCTCATTTTATCACTGGAGAGACTGACAGGATGATCAGTCATGTGAAGTGGCAGCCAGGTCCAGTAGCTGATATATTTTTTCATCAAGGTGCAGAAGAGGAAATGACGATCCACTGCTTTTGCTCCAGAGCTTTTGTGAATGATCGAGAGCTGTATAGATCGGATATCAAGTCTCTGCTGAATCAGACCCACGACGGAGCGCGAGTCTAtcaggaggatgaggaagatgaggagtCCAGCTGctctgaggaagaggaggacacGGTGCTGGATGAAGAAACCCTGCTCATGGTCAGTTTGGGGCTTCCCGTAGCCTTCGCCAGCTCCTCACTTCAGAGAAGAGCAAGCAAGAATGGATACAGAGGGAAGAAGAAGAGCAGCACTGAGCGCTGGGAGAACTCCGATTATTATAAAACCTCACAGCCGGAGCTGTTGATGGgcgaggaggaggaagaggaagagcgAAAGGAGGAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCGTAAGGAGGAAGAGCGAAAGGAGGAAGAGCGTGAGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAgagtgtgaggaagaggaggtgaAGGCTGTTGTGGACGAGACTTGCACAGAGCCGGAGTCTCACACTGATCATGCCTGGCTGCAGTACTGGAATCTGCACGGAGAGAGCCTGCTGTGGGCGAGCTGGGTGGAGAAACACGCAGAGTTCTCCACCGCGTCTCCTCCGGCTCCATGGGCGTGTCCTGAATGGAGGGAAAAGTGGGAGGAGCATGCTAATCAGATGTATGGATATTACTGGGAGCAGTTTAGCTACTGGGCTTCTCAGGGCTGGACCACAGACGAGACGATTAGCACTGCTGCTGCTCGAGACGAGGAACTGCATGCTGAGGAACACCATGAACAGCTGGATGTGATGGAACCGGAGAAAGATGGACACAAGTCTTCCACTTGCTGTGATCAGATGTCAGGAGAACCGGAGAGGTTTCCGGGCGAAAACCCAGCTGACATCACAGAGCTCGTTAGCAGTTTAAACTTGGACACAGAGAAATGCGAGCATGATGGTATTAATAAAATTTTGCACTGTAGTTATGCTAATGAGCCTCATGAAGGAGGAGACCGGAAAAGACCGGCTTCATCGGGCAGCACCGGCACGGAGAAAAGCAATGAGAAACCGAAGTCCAGTACTCAGCCAAACAGAGCCAGCGAGCCAGCGAAGAGCAGCTCAAAGGAGGATGATAGTGATGAGGACGAGCCGccagagagaaaagcaaaaacGAAAAGGAGtcatGAGCTAGACGTCGATGAACTCGCTCAGATGCCTGCTGACGAAGCGTGGGAGAGTCTGGGCCTCAAACGCGGCCATCAACACAAGTTTGTGAGTGTTTTAAAGTTCCGGAGAACGCAGGAGGGAACTCGGAGGAAGGCTAAATGGAGACAGAAAGCCACCTGCAAAATCAACAAGCATGTGTTCTTTACTGAGGACGGAGAGATGGCAGAGCCCAAGATCAACAAAACTCTCCAAAAAGTGCAGAATTTCCTCCAGACGGTCCAAGCTGGGAATGACTCGGAGAAGACAGCAGCATCAGTGCTGGATGGAACGGGAGAAGGACACGGCGCTCCAAATCCACAGGAATGTAAGGAAGAAAAGGTGGAGGAGTTTAGGGAGACTACTCAGCTTGGACAGCATGGAGAAGGTGAAGAACAATTCAGCAAGCAGCAGGTCATAACCGAGCTGGAACCAGAACCACTAACGGAACCAGAGCAGGAAACACATGTTCCTTCAGACAGTAAGGAGCAGGAACTCGGAAGGGAACTTGTGCCTCTGGACATCCCAGACTTCCTCATTCCTGATGCTCCAGAAGATGAAAATGGAGcCAAGAACCAGAAGTCttcaaagaagaagaaaaagaagaaggctAGAAGGTGGAGGAGGCGGGAAGTGGAAGTGGACGTGCCTCCTGAGATCGCAGCTGAGCCGGAGTTGGCCAAGTACTGGGCTCAGCGTTATCGCCTGTTCTCTCGTTTCGATGAGGGCGTTAAACTGGATCACGGGCTGGTTTTCTGTCACGCCTGAGAAGATAGCCGAGCACATTGCTCAGAGAGTGCAGGTTGCATCCCAGACGCTGGTCATCGTCGATGCCTTCTGTGGAGTGGGAGGAAACGCCATTCAGTTTGCCCTCACTGGAAACATGGTGATCGCCATCGATATCGACCCGGTGCGATTAGCACTCGCACAGCACAACGCTGCAGTGTATGGAGTTAGTGAAAGGATCGACTTCATCCAGGCGGATTTTCTGCAGGTGGCGCCGCAGCTCCGGGCTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 9780 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 156499 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 238267 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 492488 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 496491 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 531120 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 587902 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 591806 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 645929 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 799174 2942487 ~ 2945207 (+) True LOC113543325
XM_026941278.2 mRNA upstream 17034 2069361 ~ 2116180 (+) True xkr4
XM_026941293.2 mRNA upstream 73197 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA upstream 73197 2043248 ~ 2060017 (+) True LOC113543213
XM_034314865.1 mRNA upstream 115048 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA upstream 115048 1995611 ~ 2018166 (+) False zgc:163121
XM_026941059.2 mRNA downstream 3962 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA downstream 3962 2147275 ~ 2168213 (+) False lyn
XM_026941061.2 mRNA downstream 25735 2169048 ~ 2176365 (+) True urod
XM_026940816.2 mRNA downstream 125134 2268447 ~ 2274946 (+) True toe1
XM_026941102.2 mRNA downstream 154813 2298126 ~ 2318867 (+) False tmx3a
XR_003404390.2 other upstream 155905 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 997194 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1001531 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1294692 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1820486 275159 ~ 312728 (+) False snap91a
TU370902 other downstream 38666 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 350919 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 511887 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 511887 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 511887 2655200 ~ 2661421 (+) False LOC117599997

Expression Profile