Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941336.2 |
| length | 1382 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 1 |
| gene id | LOC113543241 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 6266493 ~ 6267874 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU373749 | lncRNA | upstream | 13824 | 6251434 ~ 6252669 (+) | True | G315591 |
| TU373751 | lncRNA | upstream | 13824 | 6251471 ~ 6252669 (+) | False | G315591 |
| TU373750 | lncRNA | upstream | 13871 | 6251434 ~ 6252622 (+) | False | G315591 |
| TU373748 | lncRNA | upstream | 13871 | 6251471 ~ 6252622 (+) | False | G315591 |
| TU373739 | lncRNA | upstream | 32230 | 6232601 ~ 6234263 (+) | True | G315583 |
| TU373835 | lncRNA | downstream | 131866 | 6399740 ~ 6399979 (+) | True | G315647 |
| TU373836 | lncRNA | downstream | 135528 | 6403402 ~ 6403601 (+) | True | G315648 |
| TU373838 | lncRNA | downstream | 138248 | 6406122 ~ 6407755 (+) | True | G315650 |
| TU373863 | lncRNA | downstream | 207815 | 6475689 ~ 6475893 (+) | True | G315665 |
| TU373858 | lncRNA | downstream | 238066 | 6505940 ~ 6506686 (+) | True | G315660 |
| XM_026940835.2 | mRNA | upstream | 83 | 6263628 ~ 6266410 (+) | True | LOC113542971 |
| XM_026941443.2 | mRNA | upstream | 42079 | 6217438 ~ 6224414 (+) | True | sbds |
| XM_026940946.2 | mRNA | upstream | 119403 | 6140585 ~ 6147090 (+) | True | LOC113543022 |
| XM_026941237.2 | mRNA | upstream | 128092 | 6124611 ~ 6138401 (+) | True | cul3b |
| XM_026941484.2 | mRNA | upstream | 158124 | 6106002 ~ 6108369 (+) | True | LOC113543361 |
| XM_034314542.1 | mRNA | downstream | 6865 | 6274739 ~ 6276110 (+) | True | LOC113543329 |
| XM_026941079.2 | mRNA | downstream | 116136 | 6384010 ~ 6399285 (+) | True | LOC113543080 |
| XM_034314660.1 | mRNA | downstream | 116151 | 6384025 ~ 6399285 (+) | False | LOC113543080 |
| XM_034314662.1 | mRNA | downstream | 116152 | 6384026 ~ 6399285 (+) | False | LOC113543080 |
| XM_026941081.2 | mRNA | downstream | 116326 | 6384200 ~ 6399285 (+) | False | LOC113543080 |
| TU373737 | other | upstream | 39253 | 6226717 ~ 6227240 (+) | True | G315581 |
| TU373444 | other | upstream | 369663 | 5894504 ~ 5896830 (+) | False | shox2 |
| trnat-agu_13 | other | upstream | 1046875 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
| TU372849 | other | upstream | 1175396 | 5088101 ~ 5091097 (+) | False | sptssb |
| TU372696 | other | upstream | 1308373 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| XR_004580329.1 | other | downstream | 669466 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU374286 | other | downstream | 865585 | 7133459 ~ 7135501 (+) | True | G316001 |
| TU374748 | other | downstream | 1427660 | 7695534 ~ 7695919 (+) | True | G316413 |
| TU375134 | other | downstream | 1995465 | 8263339 ~ 8264061 (+) | True | G316744 |
| TU375135 | other | downstream | 2000835 | 8268709 ~ 8269198 (+) | True | G316745 |
